New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1874094	41 (0.590)	4 (0.060)	3/264	NT	9.1%	coding (112/360 nt)	yeaR	DUF1971 family protein, nitrate‑inducible
	?	CP009273	= 2509092	NA (NA)					intergenic (+170/+30)	insL1/yfeA	IS186 transposase/putative diguanylate cyclase

TTCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGCATCCTTTTCCCTCCTTCGGTGAATGCGCTGAAA  >  CP009273/1873948‑1874236                                                                                                                                                   |                                                                                                                                               ttCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCg                                                                                                                                              >  1:1237238/1‑149 (MQ=255) ttCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCg                                                                                                                                              >  1:805465/1‑149 (MQ=255)             ccACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAAACCCCGGGggcg                                                                                                                                        >  2:731905/1‑143 (MQ=255)                      tGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGAt                                                                                                                         <  1:848927/149‑1 (MQ=255)                      tGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGAt                                                                                                                         >  1:215457/1‑149 (MQ=255)                        gAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTAACa                                                                                                                             >  2:258255/1‑143 (MQ=255)                             aaCACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTc                                                                                                                  >  1:779282/1‑149 (MQ=255)                                acCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGGAAGGCGTGGGTAAACCCCCGCGCGCGTTCCTTTATCAAGATGACg                                                                                                                     >  2:678515/1‑143 (MQ=255)                                acCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAGCCCCCGGGGGCGTTCCTTTATCAAGATgcag                                                                                                                     >  2:774980/1‑140 (MQ=255)                                   gCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGACGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGCCGTTCGAatat                                                                                                            >  1:457151/1‑149 (MQ=255)                                   gCAAACGGCCCCGCTTCGATAAGGATCACCTGATCAGTCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGttt                                                                                                                  <  2:259392/143‑2 (MQ=255)                                     aaaCGGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATTCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTc                                                                                                          <  1:1018012/149‑1 (MQ=255)                                          gCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCa                                                                                                     <  1:458040/149‑1 (MQ=255)                                                 ttCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCACCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAg                                                                                                    <  2:1143727/143‑1 (MQ=255)                                                    gATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCGCCGGGCGCGTTCCTTTATCAAGATGACGCTCGAATATGACGGCAGGTg                                                                                                 >  2:22438/1‑143 (MQ=255)                                                      tacggatcACCTGAGCAGGCTCTGCACTGTGTTCATCAGCGGAGCCGAGATATTGGACGGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctc                                                                                         <  1:499184‑M1/146‑56 (MQ=255)                                                      tAAGGATCACCTTATCAGGCTCTGCACTGTTTTCATCAGCGTATCCAAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctc                                                                                         <  1:720255‑M1/149‑56 (MQ=255)                                                       aaGGATTACCTGATCAGGCTCGGCACTTTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtttgtt                                                                                        <  1:1234319/149‑1 (MQ=255)                                                       aaGGAGCACCTGATCAGGCTCTGCATTGTGTTCATCAGCGTAGCCGAGACATTTTACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtttgtt                                                                                        <  1:1098606/149‑1 (MQ=255)                                                        aGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtttgttt                                                                                       <  1:1152153/149‑1 (MQ=255)                                                         ggATCCCCTGATCGGGCTCTGCACTGTGTTCATCAGGGTAGCCGGGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtt                                                                                            <  2:720555/143‑1 (MQ=255)                                                              acctgccccgactctTCACTGTGTTCATCAGCGTAGCCCAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGCGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAgtttgttt                                                                                       <  2:1035770/132‑1 (MQ=255)                                                                cTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTACGGAAGGTGCAGTTGGTatat                                                                                     >  2:151003/1‑143 (MQ=255)                                                                     cAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGc                                                                          >  1:399416/1‑149 (MQ=255)                                                                      aGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGCGCAGGTGGTTTATTCCAGAAAGGCg                                                                         >  1:77880/1‑149 (MQ=255)                                                                            tGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATAGTCCGGCAGGTGCAGCTCGGTTATTCCAGAAAGGCg                                                                         >  2:275745/1‑143 (MQ=255)                                                                             gCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACCGAAAGGCGCGGGTAAACCCCataagcgctaacttaagggttgaaccatctgaagactgcgacgcctcggtgcctcgttaagacgatgccccgcgtcct                                                                  >  1:311128‑M1/1‑71 (MQ=255)                                                                              cgcgtggttagtcaGCGTAGCCGGGTAATGTGCCCGCCCCATGCAGAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGtt                                                                       <  2:341099/132‑1 (MQ=255)                                                                                cTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagggctaacttaagggttgaaccatctgaagaatgcgccgcctcggggcctggttacgacgatgcctccggt                                                                     >  2:160666‑M1/1‑68 (MQ=255)                                                                                cTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGt                                                               <  1:1167209/149‑1 (MQ=255)                                                                                cTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGACGTTGa                                                                     >  2:819091/1‑143 (MQ=255)                                                                                 tgtgTTCATCAGCGGAGCCGCGATATTTGCCCGCCCCATGCATAACGGAAAGGCGTCGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTa                                                              <  1:950409/149‑1 (MQ=255)                                                                                  gtgtTTATCAGCGTAGCCGGGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAgc                                                                   <  2:1049924/143‑1 (MQ=255)                                                                                     ttCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTGCCTTTATCAAGATGGCGTTCGAATATTCGGGCAGGTGCAGTTTGTTTATTCCATCAAGAGGTTGAGCGCGTATGaa                                                          >  1:159737/1‑149 (MQ=255)                                                                                     ttCATCAGCGTAGCCGAGATACTTGACCGCTCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGACGGTGCAGGTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGaa                                                          >  1:679189/1‑149 (MQ=255)                                                                                              gTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCATTTATCAAGATGACGTTCGAATATTCCGGCAGGAGCCGATTGTTGATTGCTCAAAGGCGTTGAGCGCGTATGAATATAATTca                                                 >  1:1003768/1‑148 (MQ=255)                                                                                                     agaTATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTAGCAAGATGACGTTCGAATATGCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCtg                                                >  2:583086/1‑143 (MQ=255)                                                                                                        tatTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTg                                       <  1:567815/149‑1 (MQ=255)                                                                                                          tttGACCGCCCCATGCATAACGGAACGGCGTGGGTAAACCCCCGGGCTCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGaa                                     >  1:728141/1‑149 (MQ=255)                                                                                                          tttGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGACAGGCGTTGAGCCGGTATGGATATAATTCTGTGGGa                                           >  2:1097195/1‑143 (MQ=255)                                                                                                          tttGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGa                                           <  2:1140820/143‑1 (MQ=255)                                                                                                              aCCGCCCCATGCATAACGGAAAGGCGTGGGTAAAGCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAAGATAATTCTGTGGGATTTg                                       >  2:584730/1‑143 (MQ=255)                                                                                                                  ccccATGCAGAACGGAAAGGCGTGGGTAACCCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGc                                   <  2:1038626/143‑1 (MQ=255)                                                                                                                    ccATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGCATCCtttt                           <  1:499404/149‑1 (MQ=255)                                                                                                                                        tGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGATCGCGTATGAATATAATTCTGTGGGATTTGAAGCATCCTTTTCCCTCCTTCGGTGa             <  2:722094/143‑1 (MQ=255)                                                                                                                                            tAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGCATCCTTTTCCCTCCTTCGGTGAATGCGCTGaa   <  1:1270234/149‑1 (MQ=255)                                                                                                                                            tAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGCATCCTTTTCCCTCCTTCGGTGAATGCGCTGaa   <  1:212729/149‑1 (MQ=255)                                                                                                                                                   ccGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGCATCCTTTTCCCTCCTTCGGTGAATGCGCTGaaa  >  2:349234/1‑143 (MQ=255)                                                                                                                                                   ccGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGAATCCTTTTCCCTCCTTCGGTGAATGCGCTGaaa  >  2:967945/1‑143 (MQ=255)                                                                                                                                                   |                                                                                                                                               TTCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATTCCGGCAGGTGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATATAATTCTGTGGGATTTGAAGCATCCTTTTCCCTCCTTCGGTGAATGCGCTGAAA  >  CP009273/1873948‑1874236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.