New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2269346	24 (0.340)	39 (0.560)	30/270	NT	61.9%	coding (595/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

CTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAT  >  CP009273/3576644‑3576923                                                                                                                                                  |                                                                                                                                        ctctCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGa                                                                                                                                     >  1:1088904/1‑149 (MQ=255) ctctCGATTCCAGAACCTTCAGCTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAGATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATGTCAATATTTACTTATGACATTAAAGGTGa                                                                                                                                     <  1:825701/149‑1 (MQ=255)     cGATCCCAGAATCTCCAGTTAAAACCGTTTTTCCAGTAACTGGATATTATAGAAATAATGCAGTTTCCCTACATCCTGATC‑ACACACATCGTGGAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtgct                                                                                                                                 <  1:953762/149‑1 (MQ=255)       aTTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGCTTCGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAACGTGAgtctgc                                                                                                                               >  1:206962/1‑149 (MQ=255)         tCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCa                                                                                                                             >  1:355232/1‑149 (MQ=255)          ccAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCaa                                                                                                                            <  1:995258/149‑1 (MQ=255)                 cTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTg                                                                                                                     >  1:1191382/1‑149 (MQ=255)                       ttAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGCtttgg                                                                                                               >  1:901316/1‑147 (MQ=255)                         aaaaaCCTTTCTGCCGTAAATTAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGAt                                                                                                                   <  2:146529/143‑1 (MQ=255)                           aaaCCTTTTTGCCGTAAATGAATTTTATAGCAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGAttt                                                                                                                 >  2:785124/1‑143 (MQ=255)                           aaaCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTa                                                                                                           >  1:1050433/1‑149 (MQ=255)                              ccTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGGGAGGCTGCGAACTTACTGATTTAgg                                                                                                              >  2:940030/1‑142 (MQ=255)                                 ttttGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATgg                                                                                                     >  1:970656/1‑149 (MQ=255)                                    tGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatga                                                                                                        <  2:658049/143‑1 (MQ=255)                                    tGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTAGGATGgtgt                                                                                                  >  1:1233394/1‑149 (MQ=255)                                     gCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatgat                                                                                                       >  2:259284/1‑143 (MQ=255)                                       cGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGtttt                                                                                               <  1:15651/149‑1 (MQ=255)                                         tAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGAGGgtg                                                                                                   >  2:679120/1‑143 (MQ=255)                                            aTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTAAATATTAAATCATGTCAGCATAGGTGATGCTGCCAACTTACTGCTTTAGTGTATGATGGTGttt                                                                                                >  2:122590/1‑143 (MQ=37)                                                  tttATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAgg                                                                                          >  2:728310/1‑143 (MQ=255)                                                     ataGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGt                                                                                 <  1:165994/149‑1 (MQ=255)                                                      taGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGGGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTg                                                                                >  1:266173/1‑149 (MQ=255)                                                        gAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATAGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGatgagttgc                                                                                    >  2:1085115/1‑135 (MQ=255)                                                           ataatGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGt                                                                                 >  2:1104721/1‑143 (MQ=255)                                                            taatGATGATTTCATAAACCCTGATCTACA‑AGTACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCt                                                                          <  1:421349/149‑1 (MQ=255)                                                                     tttCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGGTGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAta                                                                 >  1:454661/1‑148 (MQ=255)                                                                     tttCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGtt                                                                       >  2:662338/1‑143 (MQ=255)                                                                     tttCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATc                                                                 >  1:568074/1‑149 (MQ=255)                                                                     tttCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCAAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATc                                                                 >  1:590145/1‑149 (MQ=255)                                                                          tAAACCCTGGTCTACA‑AGAACGGTTAGTGATCGGGGATTAGAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAt                                                                  <  2:931963/143‑1 (MQ=255)                                                                          tAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTg                                                            >  1:1298587/1‑149 (MQ=255)                                                                           aaaCCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGt                                                           <  1:1248990/149‑1 (MQ=255)                                                                              cccTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTCCTTATGAAATTTAGGTTGATGCTGCGAGGGTGGTGATTTAGTGTATGATGGGGTGTTTGAGGTGCTCCACTGGCTTCTGTTGCTATCGGCTGTccc                                                        >  1:1279803/1‑149 (MQ=255)                                                                              cccTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTccc                                                        <  1:306576/149‑1 (MQ=255)                                                                               cttGATCTACA‑AGAACGGTTAGTGAGCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCt                                                             <  2:530788/141‑1 (MQ=255)                                                                                 tGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGAGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCACCTGt                                                           >  2:918659/1‑143 (MQ=255)                                                                                 tGATCTACA‑AGAACGGCTAGTGATCGGGGGTTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctcc                                                     >  1:819764/1‑149 (MQ=255)                                                                                     cTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGGTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGtt                                                 >  1:17154/1‑149 (MQ=255)                                                                                      ttcA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                      <  2:703990/141‑1 (MQ=255)                                                                                           aGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCt                                            <  1:709475/149‑1 (MQ=255)                                                                                            gAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTa                                           <  1:976685/149‑1 (MQ=255)                                                                                                      tGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTTAGCTACTGACGGggt                                 >  1:600350/1‑149 (MQ=255)                                                                                                           ggggATCATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGGTTCTGTTTCTATCAGCTGTCCCTCCTGTTCCGCTACTGACGGGGTGGTGc                            <  1:997785/149‑1 (MQ=255)                                                                                                            gtgATTATAGCATTTCAATATTTATTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTTTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggt                                 <  2:817192/141‑1 (MQ=255)                                                                                                              gATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTa                         >  1:1031679/1‑149 (MQ=255)                                                                                                               aTTATAGCATTTCAATATTTACTTATGCCATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTaa                        <  1:438492/149‑1 (MQ=255)                                                                                                               aTTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTTCGTaa                        >  1:932854/1‑149 (MQ=255)                                                                                                               aTTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTaa                        >  1:27527/1‑149 (MQ=255)                                                                                                                 tataGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                            <  2:169584/143‑1 (MQ=255)                                                                                                                 tataGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGAGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACg                      <  1:785944/149‑1 (MQ=255)                                                                                                                        tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAg               <  1:1253497/149‑1 (MQ=255)                                                                                                                        tttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAg               >  1:1128401/1‑149 (MQ=255)                                                                                                                           cAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAc            <  1:1141652/149‑1 (MQ=255)                                                                                                                             atatTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGCGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGGAACGGGAAAAGCCccg          >  1:594750/1‑149 (MQ=255)                                                                                                                                tttACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCCGGTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCa             <  2:1051751/143‑1 (MQ=255)                                                                                                                                tctACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCa             <  2:391819/141‑1 (MQ=255)                                                                                                                                 ttACTTATGACCTTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCgg      <  1:1033503/149‑1 (MQ=255)                                                                                                                                     ttATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGCCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAt  <  1:769397/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                        CTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACA‑AGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAT  >  CP009273/3576644‑3576923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.