Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 2,420,353 A→T intergenic (‑86/+135) hisJ ← / ← argT histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,420,3530AT100.0% 382.3 / NA 113intergenic (‑86/+135)hisJ/argThistidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (65/48);  total (65/48)

Only 100 of 113 total aligned reads displayed.

AGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCG  >  CP009273/2420214‑2420497
                                                                                                                                           |                                                                                                                                                    
aGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATcc                                                                                                                                                <  1:405341/146‑1 (MQ=255)
aGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACACTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGc                                                                                                                                             >  2:1278247/1‑149 (MQ=255)
  ttGGGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTCCACTTATCGTGCCGTAAAATTGACCATCAAGGCAATATATCCCGccc                                                                                                                                           <  2:1146708/149‑1 (MQ=255)
  ttGCGCTGGAGGAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCg                                                                                                                                              <  1:1506790/146‑1 (MQ=255)
      gcTGGAGAATGCCAGAACCAGAGAGAGCGATAGCACCAGTTTGTTCATAATGTCCTCAACTGACATTCTTTTTATAGGGAATATTTACAGGTTGGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGtt                                                                                                                                       <  2:1336181/149‑1 (MQ=255)
      gcTGGAGAAGGCCAGAACCAGAGAGATCGATAGCACCAGTATTTTCATAATGTCCTCAACTTACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGcccc                                                                                                                                          <  1:986282/146‑1 (MQ=255)
      gcTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGcccc                                                                                                                                          >  1:1420118/1‑146 (MQ=255)
       cTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAGCTGACAGTCTTTTTATAGGGAATATTTATAGGGGTGATTCAGTTAGCGTGCCACAAAATTTACCATCAAGGCAATATATCCCGCCCCg                                                                                                                                         >  1:1589052/1‑146 (MQ=255)
       cTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTa                                                                                                                                      >  2:573327/1‑149 (MQ=255)
          gagaAGGCCAGAACCAGAGAGAGCGATAGCACCAGCTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAGTGACCATCAAGACACTATACCACGCCCTGTTa                                                                                                                                      >  1:1016281/1‑146 (MQ=255)
           agaAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGTGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAg                                                                                                                                     <  1:844747/146‑1 (MQ=255)
            gaAGCCCAAAACCAGAGAGAGCGATAACACCAGTTTTTTCATAATTTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGt                                                                                                                               <  2:1482164/149‑1 (MQ=255)
                gCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTAAG‑‑ACTaatt‑‑a                                                                                                                         >  2:1647278/1‑149 (MQ=255)
                 ccAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCCTAATGTCCTCAACTGACAGTCTTTTTATAGGGGATATTTACAGGTTTGTTACACCTCTCGTACCAGAAAATTGCCCATCAAGGCAATGTATCCCGCCCCGTTAG‑‑ACGtat                                                                                                                             >  1:981880/1‑146 (MQ=255)
                 ccAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGtat                                                                                                                             >  1:642543/1‑146 (MQ=255)
                  cAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGtatt                                                                                                                            >  1:878572/1‑146 (MQ=255)
                     aaCCAGAGAGAGCGATAGCACCAGTTTTTTCTTAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACTCTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑Attttt                                                                                                                    <  2:857789/149‑1 (MQ=255)
                     aaCCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTatt‑‑att                                                                                                                       >  1:332629/1‑146 (MQ=255)
                     aaCCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑Attttt                                                                                                                    <  2:1485203/149‑1 (MQ=255)
                       ccAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAATATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCa                                                                                                                  >  2:1021458/1‑149 (MQ=255)
                       ccAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCa                                                                                                                  >  2:1136585/1‑149 (MQ=255)
                         agagagagCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCAtt                                                                                                                >  2:651175/1‑149 (MQ=255)
                             agagCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTGG‑‑ACGTATT‑‑ATTTTTCATTa                                                                                                               >  1:1043768/1‑146 (MQ=255)
                                   aTAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCtt                                                                                                      >  2:1294489/1‑149 (MQ=255)
                                        aCCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTaa                                                                                                    >  1:165060/1‑146 (MQ=255)
                                         ccAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTAt                                                                                                >  2:1135375/1‑149 (MQ=255)
                                           atttttttCATACTGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGc                                                                                              <  2:1583471/147‑1 (MQ=255)
                                            gTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTAt                                                                                                >  1:1139391/1‑146 (MQ=255)
                                            gTTTTTTCATAATGTCCTCAACTGACAGTCCTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTAt                                                                                                <  1:598658/146‑1 (MQ=255)
                                            gTTTTTTCATAATGTCCTCAACCGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCa                                                                                             <  2:1265719/149‑1 (MQ=255)
                                             ttttttCGTAATGCCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATg                                                                                               <  1:466661/146‑1 (MQ=255)
                                             ttttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATg                                                                                               >  1:1488100/1‑146 (MQ=255)
                                              tttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGc                                                                                              >  1:264885/1‑146 (MQ=255)
                                               ttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTCG‑‑CCCCATC‑‑ATTGTTCATTAAAAATGCTTAAGTATGCAttt                                                                                          <  2:870138/149‑1 (MQ=255)
                                                tttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTc                                                                                         <  2:352707/149‑1 (MQ=255)
                                                   cATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑CCGTATT‑‑ATTTTTCATTAAAAATACTTAAGTATGCATTTCAAt                                                                                      >  2:1430887/1‑149 (MQ=255)
                                                    gtagtggccTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCa                                                                                        <  1:1657525/139‑1 (MQ=255)
                                                                  tGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAg                                                                          >  1:493509/1‑146 (MQ=255)
                                                                  tGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAg                                                                          >  1:1002314/1‑146 (MQ=255)
                                                                  tGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGc                                                                       >  2:1234614/1‑149 (MQ=255)
                                                                    aCAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCCATGCACCACGATAGTg                                                                        >  1:197935/1‑146 (MQ=255)
                                                                    aCAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTg                                                                        <  1:595714/146‑1 (MQ=255)
                                                                    aCAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGcaa                                                                     <  2:962287/149‑1 (MQ=255)
                                                                    aCAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCAACACGATAGTg                                                                        >  1:386452/1‑146 (MQ=255)
                                                                      aGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGca                                                                      >  1:1329255/1‑146 (MQ=255)
                                                                       gTCTTTTTATAGGGAATATTGACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTCAAAATGCTTAAGTAAGCATTTCCATGCACCACGATAGTGcaa                                                                     <  1:151409/146‑1 (MQ=255)
                                                                         cTTTTTATGGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAAc                                                                <  2:866930/149‑1 (MQ=255)
                                                                         cTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAAc                                                                <  2:1726603/149‑1 (MQ=255)
                                                                          tttttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAAGAAAcc                                                               >  2:1688302/1‑149 (MQ=255)
                                                                           ttttATAGGGAATATTTACAGGTTTGTTCCACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCt                                                              <  2:490217/149‑1 (MQ=255)
                                                                              tctaGGGAATATTTACGGGTTTGTTACACTTATTGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGCCTCGTGCTGGGGTTTCCATT‑‑‑GATG‑TCAGCTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGc                                                           <  2:423897/147‑1 (MQ=255)
                                                                              tataGGGAATATTTACAGGTTTGTTACACTTATTGTGGTAGAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGc                                                           <  2:1655869/149‑1 (MQ=255)
                                                                               ataGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACCAACCTGGCg                                                          >  2:1097174/1‑149 (MQ=255)
                                                                                  gggAATATTTACAGGTTTGGTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGc                                                       <  2:638297/149‑1 (MQ=255)
                                                                                    gAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCAc                                                     <  2:722738/149‑1 (MQ=255)
                                                                                          ttACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCATTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCat                                                  >  1:1060057/1‑146 (MQ=255)
                                                                                            aCAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCAtgatga                                             <  2:1062528/149‑1 (MQ=255)
                                                                                            aCAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCCTGAACCatga                                                >  1:361300/1‑146 (MQ=255)
                                                                                             catgTTTGTTACACTTCTCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatgat                                               <  1:152935/143‑1 (MQ=255)
                                                                                             cAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCGGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatgat                                               >  1:872320/1‑146 (MQ=255)
                                                                                             cAGGTTTGTTACACTTACCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATgatgat                                            <  2:1540379/149‑1 (MQ=255)
                                                                                              aGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatgatg                                              >  1:122391/1‑146 (MQ=255)
                                                                                              aGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATc                                           <  2:179585/149‑1 (MQ=255)
                                                                                              aGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGAATTTCAATGCACCCCGCTAGTGCAACAAACCTGGCGTGCACCATGATGATc                                           >  2:409792/1‑149 (MQ=255)
                                                                                               ggTTTGTTACACTTATAGTGCCATAAAATAGACCATCAAGGCAATATATCCCGCCCCGTCAG‑‑ACGTATT‑‑ATTTTTCATTAAAAAATCTTAAGTATACCAAAAAGTGCACCACGATAGTGCACCGACCCTGGCGTGCCCCATGGCGATCa                                          >  2:1119118/1‑149 (MQ=255)
                                                                                               ggTTTGTTAAACTTATCGTGCCAACAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAACAACACTGATGTATGCATTTCATTGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCa                                          <  2:1480397/149‑1 (MQ=255)
                                                                                                gTTTGTTACACTTTTCGTCCCATAAAATTGACCATCTAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATgatgat                                            <  1:534452/146‑1 (MQ=255)
                                                                                                gTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCGCGTTAG‑‑ACGTATT‑‑GTTTTTAATTAAAAATGCTTAAGTGTGCATTGCGATGCAGCAGGATGGTGCAACAAACCTGGCGTGCACCCTgatgat                                            >  1:1469770/1‑146 (MQ=255)
                                                                                                 ttactaacacGTACCGAGCCAAAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ACTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCATGCACCATGATGATc                                           <  1:9388/140‑1 (MQ=255)
                                                                                                   tGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAATAAACCTGGCGTGCACCATGATGATCATTcc                                      <  2:926055/149‑1 (MQ=255)
                                                                                                       acacTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTTTTTTTTTTTTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGCTGCTCCTTcta                                     >  1:250164/1‑144 (MQ=255)
                                                                                                         acTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCCCGACAGAACATCAAAGCTGGCGGGCACCATGATGATCATTCCATCAgg                                >  2:929870/1‑149 (MQ=255)
                                                                                                         acTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATc                                   >  1:529335/1‑146 (MQ=255)
                                                                                                         acTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGAGTGCACCATGATGATCATTCCATCAgg                                >  2:1239738/1‑149 (MQ=255)
                                                                                                           ttATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTa                              >  2:76522/1‑149 (MQ=255)
                                                                                                           ttATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTa                              >  2:15955/1‑149 (MQ=255)
                                                                                                           ttATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATGTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCCTCAg                                 >  1:785580/1‑146 (MQ=255)
                                                                                                            tATCGTACCATAAAATTGACCATCAAGGCAATATAACCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACATACCTGGCGTGCACCATGATGATCATTCCATCAGGTAc                             <  2:41378/149‑1 (MQ=255)
                                                                                                             aTCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTTCAAATGCTTAAGTCTGCATCTCAATGCACCACGGTAGTGCACCAAATCTGGCGTACACCCTCCTGATCATTCTATctacg                               >  1:175583/1‑142 (MQ=255)
                                                                                                             aTCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACa                            <  2:1527516/149‑1 (MQ=255)
                                                                                                                gTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCt                         >  2:721024/1‑149 (MQ=255)
                                                                                                                    gaTAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCCATTCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTccc                     >  2:417808/2‑149 (MQ=255)
                                                                                                                    cATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTccc                     >  2:1050147/1‑149 (MQ=255)
                                                                                                                    cATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTCAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGGGCACCATGATGATCATTCCATCAGGTACAGCtt                        >  1:1058222/1‑146 (MQ=255)
                                                                                                                     aTAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTc                       <  1:1044085/146‑1 (MQ=255)
                                                                                                                      tAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCCACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAg                   >  2:547395/1‑149 (MQ=255)
                                                                                                                      tAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTcc                      <  1:1004694/146‑1 (MQ=255)
                                                                                                                      tAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAg                   >  2:547414/1‑149 (MQ=255)
                                                                                                                      tAAAATTGAACATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATAATCAGTCCATCAGGTACAGCTTcc                      <  1:518035/146‑1 (MQ=255)
                                                                                                                        aaaTTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCg                 <  2:702729/149‑1 (MQ=255)
                                                                                                                         caTTGTCCCTCAAGGCAATAGATCCCGCCCCGTTAG‑‑ACGTAGG‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAg                   <  1:324310/145‑1 (MQ=255)
                                                                                                                         aaTTGACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCGGGTACAGCTTCCCAg                   >  1:26110/1‑146 (MQ=255)
                                                                                                                             gACCATCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGAc               >  1:884397/1‑146 (MQ=255)
                                                                                                                                 aTCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTAt           >  1:216739/1‑146 (MQ=255)
                                                                                                                                 aTCAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAg        >  2:1627762/1‑149 (MQ=255)
                                                                                                                                 aTCAACGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTAt           <  1:1613247/146‑1 (MQ=255)
                                                                                                                                   cAAGGCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCAATCAGGTACAGCTTCCCAGCGACGTATCAGTc      >  2:1495865/1‑149 (MQ=255)
                                                                                                                                      ggCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAGCAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCAcc   >  2:29458/1‑149 (MQ=255)
                                                                                                                                       gCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCg  >  2:359482/1‑149 (MQ=255)
                                                                                                                                       gCAATATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGACGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCg  <  2:1235246/149‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                                    
AGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAG‑‑ACGTATT‑‑ATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCG  >  CP009273/2420214‑2420497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑