New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	993895 =	64 (1.190)	3 (0.060)	3/272	7.9	4.8%	intergenic (+32/‑51)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
	?	CP009273	993917 =	59 (1.170)					intergenic (+54/‑29)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/994046‑993895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggggATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTGGACTTGCAGCAACACG  >  CP009273/993917‑994058                                                                                                                                                                                                                                                                                                        AGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCAAAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAG                                                                                                                                                   >  1:36665/1‑149   TCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTCATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTAAGCAAATTTTCAAAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAAACCACTTGAGGG                                                                                                                                                 >  1:81225/1‑149     CAATCCCGCCTTTACCTGCCGCCCATGCGGATGGGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGc                                                                                                                                               >  1:611870/1‑148      AATCCCGCCTTTACCTGCCGCCCATGCGGCTGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCGCTCTTAAAAAATCTGAATATCCCCTCCAGAACACTGGA                                                                                                                                                    >  2:149557/1‑143      AATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGA                                                                                                                                                    <  2:735778/143‑1                                                                CTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAg                                                                                          >  2:730660/1‑142                                                                                                TTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGC                                                    >  1:5608/1‑149                                                                                                    ATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCAAGAAAACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTNAACNGNAATNTNACTCAGCTGCCCAa                                                >  1:544962/1‑148                                                                                                                                                 TGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTGGACTTGCAGCGACAC   >  1:34998/1‑149                                                                                                                                                        GATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAAGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGACGGCAGGTAAAGGCGGGATTGGACTTGCACCAACACG  >  2:786450/1‑143                                                                                                                                                                                                                                                                                                        AGTCCAATCCCGCCTTTACCTGCCGCCCATGCGGATGAGCAGCTGAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/994046‑993895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggggATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCGCATGGGCGGCAGGTAAAGGCGGGATTGGACTTGCAGCAACACG  >  CP009273/993917‑994058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.