New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1203246 =9 (0.170)43 (0.900) 38/258 0.3 86.0% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 1205075 = 6 (0.130)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1203404‑1203246
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGA  >  CP009273/1205075‑1205218
                                                                                                                                                                                                                                                                                                                
TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCT                                                                                                                                                            >  1:536139/1‑149
    acCCCCCCCAGAGTCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCGCCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTT                                                                                                                                                              <  2:447467/141‑1
        CCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTTTCCCAAACC                                                                                                                                                    >  1:248373/1‑149
                           TTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATGAACGGTCTCGCTATGAAACCGGTGCGACCTCATG‑TAGCCGTTGCTGCATTGCGTTTTGCCCCTTCTCCCCAACCAACCTTagcgaaa                                                                                                                                       >  2:23616/1‑136
                             GCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACTGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAAT                                                                                                                                     <  2:403292/143‑1
                               GGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGA                                                                                                                                   >  2:821794/1‑143
                                GCATTCCACCCCCACTGAATGGTTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAA                                                                                                                                  <  2:340669/143‑1
                                  ATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAC                                                                                                                          <  1:814993/149‑1
                                  ATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAC                                                                                                                          <  1:523608/149‑1
                                       ACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTACGTGCTAATA‑TAGCCGTTGCTGCATAGAGTTTTGCTCCTTACCCCAAACCAACGTTTATGAACATGACGAAATAA                                                                                                                           >  2:715055/1‑143
                                         CCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACA                                                                                                                         >  2:376791/1‑143
                                                cAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAT                                                                                                                  <  2:336727/142‑1
                                                    GATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCCAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTC                                                                                                        >  1:434708/1‑149
                                                     ATTACTGATTGCTCAATACCACAAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGATTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATAGCAT                                                                                                             >  2:738262/1‑143
                                                        ACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGC                                                                                                    <  1:695304/149‑1
                                                          TGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGT‑CAATTGTTAGCTGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCGAATGGCATCATTCCTGCTT                                                                                                  <  1:666701/149‑1
                                                            tTTGCTCAATACCACCAACCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTCTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTT                                                                                                <  1:396434/148‑1
                                                              TGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGAAAATGACATCATTCCTGCTTTTAC                                                                                              >  1:241611/1‑149
                                                                   AATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGATCCTTCTCCCAAACCAACGTTTATGAAAATGAAAAAATAACAAGAAAATGTCAACAATCCTGCTTTTA                                                                                               >  2:134882/1‑143
                                                                    ATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG                                                                                        <  1:328626/149‑1
                                                                     TACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC                                                                                             <  2:532371/143‑1
                                                                       CCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAT                                                                                     >  1:299531/1‑149
                                                                         ACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGG                                                                                         >  2:692516/1‑143
                                                                          CCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG                                                                                        >  2:733048/1‑143
                                                                           CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCTAACCAACGTTTATGCAGAAGAAAAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGG                                                                                       >  2:624767/1‑143
                                                                             ATCATAACCGGTACAGCTATGAAACCGGCGCGTCCTAATG‑TAGCAATCGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA                                                                               <  1:437522/149‑1
                                                                                 TAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA                                                                                 <  2:297190/143‑1
                                                                                    CCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCAGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT                                                                              <  2:567799/143‑1
                                                                                     CGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATT                                                                       <  1:105173/149‑1
                                                                                           AGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATT                                                                       >  2:34573/1‑143
                                                                                             CTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCACATGGCAGCATCCCTGCTTTTACCA‑GGGGATTTAACATGCTTATTGGCTATGTA                                                              >  1:210850/1‑149
                                                                                              TATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTA                                                              >  1:786012/1‑149
                                                                                                   agCCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGT                                                         <  1:353109/147‑1
                                                                                                   AACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACCAGCGGGATTTAACATGCTTATTGGCTATGTACGCGT                                                         <  1:590343/149‑1
                                                                                                   AACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGT                                                         <  1:58575/149‑1
                                                                                                     aCGGTCCGTCCGAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAATTGTCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAT                                                       <  1:308887/148‑1
                                                                                                           CGTCCGAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAT                                                       <  2:474206/143‑1
                                                                                                             TCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCGGGGGGGTTTAACATGCTTATTGGCGAGGTACGCGTATCAAAAAAT                                               >  1:19801/1‑149
                                                                                                                   TG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAG                                         <  1:430405/149‑1
                                                                                                                      TAGCCGTTGCTGCATTGAGTTTTGCTCCTTTCCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAA                                       <  1:421318/149‑1
                                                                                                                       AGCCGTTGCTCCATTGAGTTTTGCTCCTTCTACCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAC                                            <  2:497183/143‑1
                                                                                                                             TGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAT                                <  1:801298/149‑1
                                                                                                                                TGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTg                             >  1:545750/1‑148
                                                                                                                                    TTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGCCTATGTACGCGTATCAACAAATGACCACAACAAAGATC                               >  2:363850/1‑143
                                                                                                                                      GAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT                       >  1:181751/1‑149
                                                                                                                                         TTTTGCTCCTTCTCCCAAACCAACGTTTAGTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAA                          <  2:559824/143‑1
                                                                                                                                                  TTCTCCCAAACCAACGTTTATGAAAAAGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCGATGTACGCATCTCAACAAGTTACCAGAACACGAATCTACAAAGTAATGgg                 >  2:294372/1‑141
                                                                                                                                                   TCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACT          <  1:894571/149‑1
                                                                                                                                                      CCCAAACCAACGTTTATGAAAATGAAGAAATAAGAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG       >  1:585595/1‑149
                                                                                                                                                      CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG       <  1:757950/149‑1
                                                                                                                                                      CCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGATGA             >  2:487804/1‑143
                                                                                                                                                      CCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTAACAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAACAACAAATGACCATAACCCAGAGCTACAACGGAATGCGCCGA             >  2:8991/1‑143
                                                                                                                                                           ACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGA  >  1:911789/1‑149
                                                                                                                                                             CAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC      <  2:701724/143‑1
                                                                                                                                                                                                                                                                                                                
TTCCATCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATG‑TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1203404‑1203246
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGA  >  CP009273/1205075‑1205218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.