New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 504218	79 (1.470)	3 (0.060) +AATGGTGCTCGGA	3/264	7.7	4.0%	noncoding (181/236 nt)	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences
	?	CP009273	= 504274	NA (NA)					intergenic (+259/+57)	ybaQ/copA	putative DNA‑binding transcriptional regulator/copper transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGT  >  CP009273/504072‑504362                                                                                                                                                    |                                                                                                                                                  atccgAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCt                                                                                                                                                 >  1:682728/1‑149 (MQ=255)     gcgCACCCTTCCCTGACGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGc                                                                                                                                                   <  2:716539/141‑1 (MQ=255)          ccATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAACCTTGTGCCTGAACCGTAGGCCGGCTAAAGCGTTTACGCCGCATCCATCATCCGAGCACCCTTGCCTCATGCGACGCTT‑ACGCGTCTTATCAGGCCTACa                                                                                                                                              >  2:22717/1‑143 (MQ=21)          ccATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGTGAACCGCTGCCTGATGGGCCGATT‑ACGCGTCTTATCAGGCCTACAAACCtg                                                                                                                                        >  1:664058/1‑149 (MQ=18)          ccATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCtg                                                                                                                                        >  1:50587/1‑149 (MQ=255)             ttGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAAc                                                                                                                                           <  2:19689/143‑1 (MQ=255)               gCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCt                                                                                                                                         <  2:275787/143‑1 (MQ=255)                   ggtGCGCCGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGc                                                                                                                                     <  2:764894/141‑1 (MQ=255)                   gATGCGTCGCCTACCCGTCTTATCAGGCCTACAAACTTCTGCCCGATCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGc                                                                                                                                     <  2:657363/143‑1 (MQ=18)                   gATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAc                                                                                                                               <  1:883753/149‑1 (MQ=255)                   gATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAc                                                                                                                               <  1:835114/149‑1 (MQ=255)                     tGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCg                                                                                                                             >  1:428863/1‑149 (MQ=255)                      gCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTACCAGCCCTACAACCCTCTGCCTg                                                                                                                                  >  2:391759/1‑143 (MQ=255)                         ccGCTCAACCGTCTTGTCAGGTCTCCAAACTTGGGCCTGACCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAAc                                                                                                                               <  2:179344/142‑1 (MQ=17)                              tccccGGCTGATCTGGCCGACAAACTTGTGCCGGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑Ga                                                                                                                   <  1:864881/147‑1 (MQ=17)                              gagccGGCTCATCGGGCCTACCAACTTGTGCCTGAGCCGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAg                                                                                                                          <  2:683937/140‑1 (MQ=17)                                cccGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGGGCCGCTT‑ACGCGTCTTATAAGGCCTACAAACCCGTGCCTGGACCGGAGGc                                                                                                                        >  2:211463/1‑143 (MQ=21)                                 ccGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GCTaa                                                                                                                >  1:606988/1‑149 (MQ=255)                                 ccGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGAAGGCCG‑GAtca                                                                                                                >  1:535118/1‑147 (MQ=255)                                 ccGTCTTACCAGGCCTACAAACTTGTGCCTGAACCGGCGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GAtca                                                                                                                <  1:186799/149‑3 (MQ=255)                                    tCTTATCAGGCCTACAAGCTTGTGCCGGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGc                                                                                                             <  1:867581/149‑1 (MQ=255)                                    tCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAAGCCG‑Ga                                                                                                                   >  2:482425/1‑143 (MQ=255)                                     cTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCg                                                                                                            >  1:722121/1‑149 (MQ=255)                                       tATGAGGCCTACAAACGTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGtt                                                                                                          <  1:78264/149‑1 (MQ=255)                                        agcAGGCCTACATACCTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAg                                                                                                               <  2:438251/141‑1 (MQ=255)                                        aTCAGGCCTACCACCCTGTGCCTGAACCGCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAg                                                                                                               <  2:589961/143‑1 (MQ=14)                                           aGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAAATGTCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTAcg                                                                                                      >  1:674654/1‑149 (MQ=255)                                              ccTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTAcgccg                                                                                                   <  1:702464/149‑1 (MQ=255)                                               ctccaagcgtctgacTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTa                                                                                                        <  2:582348/129‑1 (MQ=255)                                               cTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGtttc                                                                                                        >  2:822019/1‑142 (MQ=255)                                                 aCAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCAt                                                                                                >  1:778043/1‑149 (MQ=255)                                                   aaaCTTGTGCCTGAAGCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATAGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCATACAAACCTGTGCCTGAACCGTAGGCCG‑GTTAAGGCGCTTAcgcg                                                                                                    >  2:521876/1‑142 (MQ=17)                                                    caCTTGTGCCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTAcgccg                                                                                                   <  2:666488/142‑1 (MQ=255)                                                    aacctggccccgAACCGTAGGCCGGATAAGGCTTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTAcgccg                                                                                                   <  2:666489/132‑1 (MQ=255)                                                          tgCCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGACGCGACGCTT‑ACGCGTCTTATCAGGCCTCACAACATGCCCCCGACCCGTAGGCCG‑GATAAGGCGTTTACTCCGCACCCg                                                                                             <  2:201399/143‑1 (MQ=14)                                                            cccaaaCCGCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCAt                                                                                     <  1:345569/145‑1 (MQ=255)                                                            ccTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCAt                                                                                     <  1:910709/149‑1 (MQ=255)                                                            ccTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTCTACGCCGCATCCGGc                                                                                           >  2:581300/1‑143 (MQ=255)                                                                   cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTcaa                                                                              >  1:59288/1‑147 (MQ=255)                                                                    gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt                                                                             <  1:466147/149‑1 (MQ=255)                                                                     tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCg                                                                                  >  2:185906/1‑143 (MQ=255)                                                                     tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATg                                                                            <  1:260172/149‑1 (MQ=255)                                                                      aGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTCTTTTTCGTTCCCTGGCCCG‑ATTCCGTTATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc                                                                           <  1:901423/149‑1 (MQ=17)                                                                       ggCCGTATAAGGCTGTTACGTCGCATCCGGGATCAGAGCATCATTGCCTGATGCGACGCTT‑AGGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTc                                                                                <  2:46355/143‑1 (MQ=14)                                                                        gCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa                                                                         >  1:385453/1‑149 (MQ=255)                                                                        gCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa                                                                         >  1:375182/1‑149 (MQ=255)                                                                          cGGATACGGCGTTTACGCCGCATCCGGCATCCGAGCACCCTTGCCTGATGCTTCGCTT‑ACGCGTCTTATCAGGCCTACTAACCTGTTCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt                                                                             <  2:804615/143‑1 (MQ=17)                                                                          cGGATAAGGCGTTTACGCCGCATCCGGCATCAGCGAGACGTTGGCTGATG‑GTGGTTTCTCTCTTCTTATCAGGCGTCCATACCTGTGTCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt                                                                             <  2:804612/143‑1 (MQ=9)                                                                            gATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTGGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCAAGATTCGATGc                                                                           >  2:840422/1‑143 (MQ=255)                                                                            gATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc                                                                           <  2:514934/143‑1 (MQ=255)                                                                               aaGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTTGGCCG‑CATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcgc                                                                  <  1:630825/149‑1 (MQ=255)                                                                                   cGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCTG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAcc                                                              <  1:3108/149‑1 (MQ=255)                                                                                          gccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagc                                                       >  1:565663/1‑149 (MQ=255)                                                                                          gccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAAGCGTTTACGCCGCATCCGGCAGTCATACGTCGATGCCAAATGCGCCAccc                                                             >  2:83289/1‑143 (MQ=255)                                                                                             gcatccggcatccgTGCACCATTGCCTGATGCGACGCTT‑ACGCGTCGTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagcagc                                                    <  1:42130/149‑1 (MQ=255)                                                                                              catccggcatccgAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCCaaa                                                         >  2:441411/1‑143 (MQ=255)                                                                                                tccggcatccgAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagc                                                       <  2:625833/143‑1 (MQ=255)                                                                                                 ccggcatccgAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCCGGCCTACAAACCTGTGCCTGAACCGCAGGCCG‑GACAAGGCGTTTACGCCCCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCCAAagca                                                      >  2:546552/1‑143 (MQ=18)                                                                                                   ggcatccgAGCACCATTGCCGGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATcc                                              <  1:142592/149‑1 (MQ=255)                                                                                                            gCACCATTGCCGGATGCCGCGCTT‑ACGCGACTTAGCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCa                                           <  2:365251/143‑1 (MQ=21)                                                                                                               ccATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAatg                                        <  2:383082/143‑1 (MQ=255)                                                                                                                   tGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTAt                              <  1:467159/149‑1 (MQ=255)                                                                                                                       tGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCTTGCACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCt                          >  1:181363/1‑149 (MQ=255)                                                                                                                       tGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCGATGATGTACTTATTCCt                          >  1:386577/1‑149 (MQ=255)                                                                                                                       tGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCt                          >  1:543035/1‑149 (MQ=255)                                                                                                                        gATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGCCATGCGTCGATGCCAAATGCGCCCCCCTAAAGCAGCGCATCCGCAATGATGTACTTa                               >  2:83983/1‑143 (MQ=255)                                                                                                                          tGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAAGGATGTGCTTAtc                             >  2:268351/1‑142 (MQ=255)                                                                                                                            cGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTcc                           >  2:245685/1‑143 (MQ=255)                                                                                                                             gACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGGGTCGATGCCAAAGGCGCCACCCTAAAGCAGCGCATCCGCAAGAGTGTAATTATTCCt                          >  2:555098/1‑143 (MQ=21)                                                                                                                             gACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGtt                    >  1:879451/1‑149 (MQ=255)                                                                                                                                gCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCg                       >  2:565881/1‑143 (MQ=255)                                                                                                                                   t‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGGAGGCTG‑GATAATGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACTCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGtt                    <  2:548749/143‑1 (MQ=255)                                                                                                                                       gcgTCTTCTCAGGCCCACAAACCTGTGCCTGAACCGTAGGCCG‑CATAAGTCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTaa                 <  2:711223/143‑1 (MQ=255)                                                                                                                                           cTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACGGCAGCaa       >  1:468838/1‑149 (MQ=255)                                                                                                                                            ttATCAGGCCTACAAACCTGTGCCTGAACCGGAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAAc      <  1:122878/149‑1 (MQ=255)                                                                                                                                            ttAGCAGCCCTCCAAACCTGTGCCTGTACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAAc      <  1:438591/149‑1 (MQ=255)                                                                                                                                               tCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCgg   <  1:756365/149‑1 (MQ=255)                                                                                                                                                cAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCCGCAACCGGt  >  1:791875/1‑149 (MQ=255)                                                                                                                                                  ggCCTACAAGCCTGGGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAAc      <  2:170700/143‑1 (MQ=255)                                                                                                                                                   gCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGACAAATGCGCCACCCTAAAGCAGCGCATCCGCAACGATCTACTTATTCCTTCGGTTTAAACCGCAGCAAcc     >  2:497401/1‑143 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGT  >  CP009273/504072‑504362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.