New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2902695 =	54 (1.000)	4 (0.080)	4/280	7.4	6.8%	coding (331/1638 nt)	pyrG	CTP synthetase
	?	CP009273	2902717 =	57 (1.100)					coding (309/1638 nt)	pyrG	CTP synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGTTTCAGCGCCGTCTTCAGTAA  >  CP009273/2902553‑2902841                                                                                                                                               |                                                                                                                                                   cGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAg                                                                                                                                              <  1:295069/149‑1 (MQ=255)     tCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTCCTACGTCATGACCTTCGCCACCTTCCAGCACGCGCCCTTTGCTTGGGTTAGTGATGTGCGGAATAACCTGCCCGGTTGCGCCGCGGtgg                                                                                                                                          >  1:769420/1‑147 (MQ=255)       gCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAg                                                                                                                                              <  2:779312/143‑1 (MQ=255)        cTTCGAGGAACGGCGAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAgg                                                                                                                                             >  2:15134/1‑143 (MQ=255)        cTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAgg                                                                                                                                             >  2:787485/1‑143 (MQ=255)         ttCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCTCCACCTTCCAGCACGCGCTCTTTAATTGCGTTAGAGATGTGCGGAATAACCCGCACGGCTACGCCGAGGTAGTCAc                                                                                                                                      >  1:506946/1‑149 (MQ=255)          tCGAGGAACTGCAAGTATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTCCGTCATGACCTTCGCCACCTTCCAGCTCGCGCTCTTTGATGGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTa                                                                                                                                           <  2:342310/143‑1 (MQ=255)            gAGGAACGGCAAGGATTCGATATAACCTACTGTACCGCCGATTTCTACAAGTACTACGTCATGACTTTCGCCACCTTGCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCCCGGTTGCGCCGAGTTAGt                                                                                                                                         >  2:620165/1‑143 (MQ=255)              cgAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCGTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCa                                                                                                                                       <  2:198641/142‑1 (MQ=255)                 aCGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACcg                                                                                                                                    <  2:528845/143‑1 (MQ=255)                    gCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCgcgg                                                                                                                                 >  2:642187/1‑143 (MQ=255)                     cAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGAGATGTGCGGAATAACCTGCACGGTTGCGCGGAGGTAGTCACCGCGGCGTTCtt                                                                                                                          <  1:503959/149‑1 (MQ=255)                                  tCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGACACCTCGGCGTTCTTTACGCAGAACGTc                                                                                                             <  1:599616/149‑1 (MQ=255)                                     ccTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCaga                                                                                                          <  1:758377/149‑1 (MQ=255)                                       tACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGGTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGCGGTAGTCACCGCGGCGTTCTTTACGCAGAACGt                                                                                                              >  2:107062/1‑143 (MQ=255)                                              ccgccgATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGGTCTTTGATTGCGTTAGTGATTTGCGGAATAACCTGCACGGTTGCGCAGAGGTAGTCACCGCGGCGTTCTTTAAGCCGAACGtacgagaa                                                                                                       >  2:229126/1‑136 (MQ=255)                                               cgccgATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAGGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCGCCGCGGCGTTCTTTACGCCGAActtgagggcag                                                                                                      >  2:62694/1‑133 (MQ=255)                                               cgccgATTTCTACCACTACTACGGCAGGGCCTGCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGa                                                                                                <  1:618071/149‑1 (MQ=255)                                                gccgATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAAAGTCAGAGgaga                                                                                                     >  2:351064/1‑143 (MQ=255)                                                      ttCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCgtgg                                                                                         <  1:606277/149‑1 (MQ=255)                                                                    cGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTgcgg                                                                           >  1:705554/1‑149 (MQ=255)                                                                        aTGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCggcggc                                                                       >  1:806545/1‑149 (MQ=255)                                                                           aCCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGGTGcggcgggcca                                                                    >  1:326952/1‑145 (MQ=255)                                                                            ccTTCGCCACCTTCCAGCACGCGCTCTTTGATTTCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCAt                                                                   >  1:585144/1‑149 (MQ=255)                                                                             cTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGcggcgg                                                                        <  2:535993/143‑1 (MQ=255)                                                                                cGCCACCGTCCAGCACGCGCTCTTTGATTGCGTCAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTg                                                               <  1:643086/149‑1 (MQ=255)                                                                                  ccACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCCGAACGTCAGAGGAGATACGACCCGTGGGGAAGTTGGTGCGGCGGcacaa                                                                   >  2:114057/1‑142 (MQ=255)                                                                                  ccACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCAt                                                                   >  2:490986/1‑143 (MQ=255)                                                                                   cACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCCTTTTGGTa                                                            >  1:333978/1‑149 (MQ=255)                                                                                       ttCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTGCGaa                                                        >  1:799441/1‑149 (MQ=255)                                                                                          cAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGa                                                     <  1:789371/149‑1 (MQ=255)                                                                                             cACGCGCTCTTTGATGGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGaa                                                        <  2:339213/143‑1 (MQ=255)                                                                                                gcgcTCTTTGATTTCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCCGCGGCTCATTTTGGTACGAATGa                                                     <  2:392658/143‑1 (MQ=255)                                                                                                gcgcTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGa                                                     <  2:841423/143‑1 (MQ=255)                                                                                                    tctTGGATGGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACg                                                 <  2:136482/143‑1 (MQ=255)                                                                                                         gATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGt                                            >  2:211525/1‑143 (MQ=255)                                                                                                         gATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGcc                                      >  1:603194/1‑149 (MQ=255)                                                                                                          aTTGCGTTAGTGATGGGAGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTa                                           <  2:519308/143‑1 (MQ=255)                                                                                                              cGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTACTTCACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCccagg                                 >  1:131687/1‑149 (MQ=255)                                                                                                              cGTTAGTGATGGCCGGAACAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTGCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGc                                       <  2:12489/143‑1 (MQ=255)                                                                                                               gTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCCCGTAGTGcc                                      >  2:720343/1‑143 (MQ=255)                                                                                                               gTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAAGGAAAAGATCGtgaggcc                                      >  2:559538/1‑137 (MQ=255)                                                                                                                 tAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGcccc                                    <  2:646494/143‑1 (MQ=255)                                                                                                                 tAGTGATGTGCGGAATAACCTGCACGGTCGCGCCGGGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGcccc                                    <  2:337809/143‑1 (MQ=255)                                                                                                                 gagggATGGGCGGAATAACCTCCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGcccc                                    <  2:820301/139‑1 (MQ=255)                                                                                                                    tGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTGGCGGCGGCGCATTTTGGTACGAATGAAACGCCCGTAGTGCcccaggcccagg                           >  1:899206/1‑149 (MQ=255)                                                                                                                         tgCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGGCCCGTGGTGGAGTTGTTGCGGCGGCTCATTTTGGTGCGAATGAAACGCTCGTCGTGCCCCGGGTCCAGGTCGGt                      >  1:43237/1‑149 (MQ=255)                                                                                                                         tgCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGGAGTTGTTGCGGCGGCTCGTTTTGGTACGAATGAAACGGTCGTAGTGCCccaggtccag                            >  2:648621/1‑143 (MQ=255)                                                                                                                          gCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGtt                     <  1:450327/149‑1 (MQ=255)                                                                                                                          gCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGtt                     <  1:770839/149‑1 (MQ=255)                                                                                                                           cGGAATAACCCGCACGGTTGCCCCGAGGTAGTCACCGCGGTGGTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAACGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGttt                    <  1:335577/149‑1 (MQ=255)                                                                                                                            ggAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCGCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCGAGGTCGGGTTc                   >  1:913955/1‑149 (MQ=255)                                                                                                                             gAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCg                        <  2:702953/143‑1 (MQ=255)                                                                                                                                      gCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGTTTCAgcg               <  2:738078/143‑1 (MQ=255)                                                                                                                                             tacgcCGAGGTAGCCCCCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGTTTCAGCGCCGTCTTCAGTaa  <  1:232272/147‑1 (MQ=255)                                                                                                                                               cgcCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGATCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGTTTCAGCGCCGTCTTCa      <  2:597590/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   CGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCACGGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGACCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGTTTCAGCGCCGTCTTCAGTAA  >  CP009273/2902553‑2902841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.