New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	910032 =	63 (1.170)	3 (0.060)	3/278	8.0	4.9%	coding (282/900 nt)	ybjE	putative transporter
	?	CP009273	910077 =	56 (1.080)					coding (237/900 nt)	ybjE	putative transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAAGCCAGTCCACTTAGACCAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGA  >  CP009273/909930‑910224                                                                                                                                                    |                                                                                                                                                    gAAAGCCAGGCCACTTAGACCAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAggg                                                                                                                                                    <  1:154701/149‑1 (MQ=255)   aaGCCAGTCCACTTAGACCAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGggcg                                                                                                                                                  <  1:355929/149‑1 (MQ=255)    aGCCAGTCCACTTAGACCAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGggcgg                                                                                                                                                 >  1:509313/1‑149 (MQ=255)         gTCCACTTAGACCAATGGCAAACCCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAata                                                                                                                                            <  1:156783/149‑1 (MQ=255)             aCTTAGACCAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCCCCAGCCACATCAGGGCGGCAATATTac                                                                                                                                        >  1:889932/1‑149 (MQ=255)                  gACCAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCGGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTa                                                                                                                                         <  2:84509/143‑1 (MQ=255)                    ccAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCCGACACATCAGGGCGGCAATAGTaca                                                                                                                                       <  2:384109/143‑1 (MQ=255)                    ccAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATGAGGGCGGCAATATTACACAGTaa                                                                                                                                 <  1:600707/149‑1 (MQ=255)                    ccAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTaca                                                                                                                                       <  2:317105/143‑1 (MQ=255)                          gCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCGGGCCTCGCTCCAGCGACCTCAGGGGCGCAATAGTACAAAGTaaaaagcc                                                                                                                           >  1:394565/1‑145 (MQ=255)                            aaaaCCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACgg                                                                                                                         >  1:13516/1‑149 (MQ=255)                             aaaCCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGAAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGt                                                                                                                        >  1:867013/1‑149 (MQ=255)                              aaCCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACTCGACGCGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAAGATTACAAAGTAAAATa                                                                                                                             >  2:764047/1‑143 (MQ=255)                                      actactACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGAc                                                                                                               <  1:261351/149‑1 (MQ=255)                                                cgcACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTGATACTGACGGCAGaataa                                                                                                     <  1:673026/149‑1 (MQ=255)                                                       ttgtggCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGaataat                                                                                                    <  2:494443/138‑1 (MQ=255)                                                        tttAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGATGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAAAAACTGTAATACTGACGGCAGAATAATGCAGaaa                                                                                             >  1:114810/1‑148 (MQ=255)                                                         ttAGCGCCTCCCGCGCCATCGCAATTCGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGc                                                                                                  <  2:394462/143‑1 (MQ=255)                                                          ttgCGACTCCAGCGGCATCGCATGACGCGTCGGGAGTTTTGCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCa                                                                                                 <  2:363034/141‑1 (MQ=255)                                                           ggCGACTCCAGCGCCACCGCAATACGCGACGGGAGGTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCGCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGc                                                                                          <  1:443365/148‑1 (MQ=255)                                                           aGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGc                                                                                          <  1:679914/149‑1 (MQ=255)                                                             cGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGaa                                                                                              >  2:596631/1‑143 (MQ=255)                                                                cTCCAGCGCCCTCGCAACACGCGACGGGAGTTTCTCGTGCTGATGGTGGTTGCGCCCCGGCAGGCCTCGCCCCAGCCACATCAGGGCGGAAATAGTCCACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACa                                                                                     <  1:252228/149‑1 (MQ=255)                                                                   cAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCa                                                                                        >  2:382410/1‑143 (MQ=255)                                                                    aGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCaa                                                                                       <  2:11722/143‑1 (MQ=255)                                                                          aTCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGc                                                                           >  1:48504/1‑149 (MQ=255)                                                                            cGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTAc                                                                               >  2:795505/1‑143 (MQ=255)                                                                               aaTACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCACCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGACAACAGGTTACAgg                                                                            >  2:530846/1‑143 (MQ=255)                                                                                  aCGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTAt                                                                   <  1:853418/149‑1 (MQ=255)                                                                                   cgcgACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAg                                                                        <  2:443307/143‑1 (MQ=255)                                                                                     cgACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCga                                                                <  1:880373/149‑1 (MQ=255)                                                                                        cGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGaa                                                             >  1:391648/1‑149 (MQ=255)                                                                                         gggAGTTTTTCTTTCTGAGGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACACCAGGGCGGCAATCTTACACATTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATc                                                                  <  2:22662/143‑1 (MQ=255)                                                                                           gAGTTTTTGTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCga                                                                <  2:265271/143‑1 (MQ=255)                                                                                              tttttCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACATGTTACTGGCGAGGTTATCGAGAAACGCCa                                                       <  1:561499/149‑1 (MQ=255)                                                                                                tttCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCATTATTGCACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAAAGCCAGa                                                     >  1:138629/1‑149 (MQ=255)                                                                                                tttCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGGGGTTATCGAGAAACGCCAGa                                                     >  1:391931/1‑149 (MQ=255)                                                                                                tttCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGa                                                     <  1:273301/149‑1 (MQ=255)                                                                                                      gCTGATGGTGGGTGCGCCACGGCAGGCCCCGCTCCAGCCACATCAGGGCGGGAATATTACTCAGTAAAATAACGGTAATACTGCCGGCAGAATAATGCAGAATCGCCAACAGGTTCCTGGCGAGGTTATCGAGAAACGCCAGa                                                     <  2:687035/143‑1 (MQ=255)                                                                                                          aTGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCa                                           >  1:779925/1‑149 (MQ=255)                                                                                                             gtggtTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATaa                                        >  1:378917/1‑149 (MQ=255)                                                                                                                gtTGCGCCACGGCAGGCCTCGCTCCAGCCACATAAGGGCGGCAATATTACACAGTAAAATAAAGGTAATACTGACGGAAGAATAATGCAGAATCGCCAACAGGTTACTGGCAAGGTTATCGATAAACGCAGGAATGATAccaa                                           >  2:339012/1‑141 (MQ=255)                                                                                                                     gcCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGAC‑GCAGAATAATGCAGACTCGCCTACAGGTTACTGGCGAGGTTATCGAGACACGCCAGACTGATACCCATAAAAAAGAGaa                               >  1:668179/1‑149 (MQ=255)                                                                                                                       cACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGATACTGGCGAGGTAATCGAGAAACGCCAGACTGATACACATaaaaaa                                    >  2:652050/1‑143 (MQ=255)                                                                                                                         cGGCAGGCCTCGCTCCAACCACATCAGGGCGGCAATCTTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATaa                            <  1:781/149‑1 (MQ=255)                                                                                                                         cGGCAGGCCCCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATaa                            <  1:721/149‑1 (MQ=255)                                                                                                                          ggCAGGCCTCGCTCCAGCCACACCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGAAGAATAATGCAGACTCGCCAACAGGTTACTGGCCAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAagag                                 <  2:346494/143‑1 (MQ=255)                                                                                                                            cAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGaa                               <  2:43378/143‑1 (MQ=255)                                                                                                                             aGGCCTCGCTCCAGCCGCATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTa                        >  1:578818/1‑149 (MQ=255)                                                                                                                               ggcTCGCTCCAGCCACATCAGGGGGGCAATAATACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTaaa                      <  1:296143/147‑1 (MQ=255)                                                                                                                               gCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTaaa                      <  1:708030/149‑1 (MQ=255)                                                                                                                                    gcgcaaccaccaTCAGGGCGAAAATAAAACAAAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCAAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGAAAAAAAAAAAAAAAAAAGAGAATAAGGTaa                       <  2:680361/133‑1 (MQ=255)                                                                                                                                      tCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTCCTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCa               >  1:633869/1‑149 (MQ=255)                                                                                                                                      tCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCa               >  1:82832/1‑149 (MQ=255)                                                                                                                                       ccAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGACGAGGTGATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAg              >  1:550408/1‑149 (MQ=255)                                                                                                                                         aGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCt            <  1:787344/149‑1 (MQ=255)                                                                                                                                          gCCACACCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATc                 <  2:469969/143‑1 (MQ=255)                                                                                                                                              caTCAGGGCGGCAATAGTACACAGTAAAATAACGGTAATACTGACGGAAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGc             <  2:36598/143‑1 (MQ=255)                                                                                                                                                   gggCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGa  <  1:428125/149‑1 (MQ=255)                                                                                                                                                    ggcggcAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATa       >  2:563384/1‑143 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GAAAGCCAGTCCACTTAGACCAATGGCAAAACCAATCACTACTACGCCGCACAGTTTTAGCGACTCCAGCGCCATCGCAATACGCGACGGGAGTTTTTCTTGCTGATGGTGGTTGCGCCACGGCAGGCCTCGCTCCAGCCACATCAGGGCGGCAATATTACACAGTAAAATAACGGTAATACTGACGGCAGAATAATGCAGAATCGCCAACAGGTTACTGGCGAGGTTATCGAGAAACGCCAGACTGATACCCATAAAAAAGAGAATAAGGTAAACCATCCAGCTTAATAGCTGA  >  CP009273/909930‑910224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.