New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1317644 =	58 (1.080)	3 (0.060)	3/272	7.9	5.7%	coding (168/882 nt)	yciV	PHP domain protein
	?	CP009273	1317699 =	44 (0.870)					coding (223/882 nt)	yciV	PHP domain protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAA  >  CP009273/1317551‑1317836                                                                                                                                                     |                                                                                                                                          aGAAGCATTGGTGCACCGGGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCa                                                                                                                                           <  1:517734/149‑1 (MQ=255)       aTTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCa                                                                                                                                           <  2:401035/143‑1 (MQ=255)           gTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGa                                                                                                                                 >  1:567703/1‑149 (MQ=255)                  gggCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCAt                                                                                                                          <  1:819579/147‑1 (MQ=255)                          gagaTGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCa                                                                                                                  >  1:4096/1‑149 (MQ=255)                           agaTGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCat                                                                                                                 >  1:733895/1‑149 (MQ=255)                                 gcgTCGGCACCCTGGCGATCACCGACCATGACCCCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCCGATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCat                                                                                                                 <  2:216356/143‑1 (MQ=255)                                  tctccgCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCg                                                                                                          <  1:410777/144‑1 (MQ=255)                                       gCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGCGCGGCACTTTCACGTTCGGGACTGGCGTTGAATCTTATTCACGGCGTGGAAATTTCCACGGTCTGGGAAAATCCTGAAATTCATATTGTCGGGCTg                                                                                                     >  1:641425/1‑149 (MQ=255)                                       gCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCGTATTCCCGGCGTGGGAATTTCCACGGTCTGGGAAAAGCATGAAGTTCATCTCGTc                                                                                                           >  2:368056/1‑143 (MQ=255)                                           ccTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCCCGGGCTGGGAAAATCATGAAATTCATATTGTCgggacggata                                                                                                 >  1:130/1‑142 (MQ=255)                                             tGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGGGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGcgg                                                                                                     >  2:138354/1‑141 (MQ=255)                                             tGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATAtt                                                                                               <  1:697592/149‑1 (MQ=255)                                             tGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATAtt                                                                                               >  1:788331/1‑149 (MQ=255)                                              ggCGATCACCGACCATTACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTAGTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTg                                                                                              <  1:357978/149‑1 (MQ=255)                                                cGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGat                                                                                            <  1:428368/149‑1 (MQ=255)                                                    cACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTa                                                                                        <  1:307321/149‑1 (MQ=255)                                                    cACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTa                                                                                        <  1:174606/149‑1 (MQ=255)                                                      ccGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGat                                                                                            <  2:704561/143‑1 (MQ=255)                                                        gACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGGAAATCGTGAAAGTCATATTGTCGGGCTGACTATTGCTATTACTCa                                                                                    >  1:882489/1‑149 (MQ=255)                                                        gACCAGGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGatat                                                                                          <  2:806442/143‑1 (MQ=255)                                                          acttGACGCCACAGCTGCAATCGCGCCAGCAAGAGAGGACATTTCACGTTCGGGACTGGCGTTGAATCTTAGTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATc                                                                                  <  1:299438/146‑1 (MQ=255)                                                             tGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTACCACGGGCTGGGAAAATCATGAAATTCATATTGTCGGGATGAATATTGATATTACTCATCCGc                                                                               <  1:131682/149‑1 (MQ=255)                                                              gACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCa                                                                                    >  2:762306/1‑143 (MQ=255)                                                                    caagaggccaTCGCGCCAGCAACGGACGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGTAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATcgaac                                                                              <  2:130793/134‑5 (MQ=255)                                                                       gCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGa                                                                     <  1:730461/149‑1 (MQ=255)                                                                          gCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGtt                                                                  <  1:736071/149‑1 (MQ=255)                                                                          gCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCCGTAATGTGTGAGtt                                                                  >  1:144257/1‑149 (MQ=255)                                                                           cAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAAtgtgt                                                                       <  2:698602/143‑1 (MQ=255)                                                                             aTCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGGATATTGATATGACTCATCCGCTAAtgtgtgt                                                                     <  2:609519/143‑2 (MQ=255)                                                                             aTCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGa                                                                     <  2:475230/143‑1 (MQ=255)                                                                              tCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGGGTGAGTTCCTc                                                              >  1:817069/1‑149 (MQ=255)                                                                                      gCAAGAGAGGACATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCgcagca                                                      <  1:712774/149‑1 (MQ=255)                                                                                       cAAGGGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTcgcg                                                           <  2:290319/143‑1 (MQ=255)                                                                                               gAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGACCg                                             >  1:372019/1‑149 (MQ=255)                                                                                               gAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGGGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACg                                             >  1:220511/1‑149 (MQ=255)                                                                                                   tttCACGTTCGGGACTGGCTGTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGaa                                               <  2:83478/143‑1 (MQ=255)                                                                                                           tCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCg                                 <  1:32631/149‑1 (MQ=255)                                                                                                            cGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGCGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTGCTCGCGCAGCAGACAGAACGGCGCAAt                                      <  2:632323/143‑1 (MQ=255)                                                                                                                   ggCGTTGAATCCTATTCCCGGCGGGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGc                         <  1:139125/149‑1 (MQ=255)                                                                                                                         gAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGc                         >  2:79436/1‑143 (MQ=255)                                                                                                                          aaTCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGc                  >  1:336550/1‑149 (MQ=255)                                                                                                                               tATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCGGATTg                   >  2:98809/1‑143 (MQ=255)                                                                                                                                         cgtgAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACt         <  2:725729/140‑1 (MQ=255)                                                                                                                                          tGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGaaaaa  <  1:903197/149‑1 (MQ=255)                                                                                                                                            gAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGa      <  2:95550/143‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                          AGAAGCATTGGTGCACCGTGCAGTCGAGATGCGCGTCGGCACCCTGGCGATCACCGACCATGACACCACAGCTGCAATCGCGCCAGCAAGAGAGGAAATTTCACGTTCGGGACTGGCGTTGAATCTTATTCCCGGCGTGGAAATTTCCACGGTCTGGGAAAATCATGAAATTCATATTGTCGGGCTGAATATTGATATTACTCATCCGCTAATGTGTGAGTTCCTCGCGCAGCAGACAGAACGGCGCAATCAGCGGGCGCAGCTGATTGCCGAAAGACTTGAAAAA  >  CP009273/1317551‑1317836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.