New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 221768	NA (NA)	20 (0.130)	11/286	18.1	NA	noncoding (1511/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	CP009273	= 221780	NA (NA)					noncoding (1523/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.

AGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCT  >  CP009273/221688‑221901                                                                                 |                                                                                                                                      ggatgtaggtagCATAGCCTTCGGGAGGTCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTACCAAGGTTACTGTAGGGGGCCCTGCTGTTTGAGCACCGCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGAtt                                                                   <  2:2245371/145‑1 (MQ=1) agtagTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCATTTTGCGACTCATCACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCGCACACAGAtt                                                                   <  1:56304/146‑1 (MQ=1)                        ggcgggCCCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGCCTGATGAAAATGAGCAGTaaa                                            <  2:783744/146‑1 (MQ=0)                             gcacTTATCACTTTGGGATTCATGACGGGGGTGAAGTCGTAATAATGTAACCGTAGGGTAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACctc                                       <  1:199224/146‑1 (MQ=1)                                    cctctgtgtgATTCAGGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGc                                <  1:495094/143‑1 (MQ=0)                                      acattGGGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTGACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCtt                              <  2:333667/146‑1 (MQ=0)                                                tcctGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAgg                    <  2:236074/146‑1 (MQ=1)                                                                  cggaaCAAGGTAACCGTAGGGGACCATGGGGTTGGATCCCCTCCTTACCTTAAATAAGCGTCCTTTGCGGTGCTCACACCGCTTGTCTGATTCAAATGAGCAGTAAAACCTCCACAGGCTTGTAGCTCAGGTGGTTAGATCGCACCCCt  <  1:1277440/146‑1 (MQ=1)                                                                                 |                                                                                                                                      AGAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCT  >  CP009273/221688‑221901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.