New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3263118 =	NA (NA)	3 (0.070) +TAAACCACGTAG	3/272	6.5	NA	noncoding (38/98 nt)	RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	= 4460285	NA (NA)					noncoding (88/88 nt)	RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

TACGTAATAAACCGTTCCGGCGGGTTTCAGATTGTTGAGTGCGCTTTATTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATATTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3263231‑3263118 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGC  <  CP009273/4460285‑4460261                                                                                                                   ||||||||||||                          TACGTAATAAACCGTTCCGGCGGGTTTCAGATTGTTGAGTGCGCTTTATTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATGGCGTAGGCCTGATGCGCTACGCTTATCAG    <  1:83184/149‑1  ACGTAATAACACGGTCCGGCGGGTTTCAGATTGTTGAGTGCGCTTTATTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATGGCGTAGGCCTGATGCGCTACGCTTATCAGG   <  1:187154/149‑1   CGTAATAACCCGTTCCGGCGGGTTTCAGATTGTTGAGTGCGCTTTATTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATGGCGTAGGCCTGATGCGCTACGCTTATCAGGC  <  2:570151/149‑1                                                                                                                   ||||||||||||                          TACGTAATAAACCGTTCCGGCGGGTTTCAGATTGTTGAGTGCGCTTTATTCATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCACGCAAATTCAATATATTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3263231‑3263118 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGC  <  CP009273/4460285‑4460261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.