New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3263118 =	NA (NA)	3 (0.070) +TAAACCACGTAG	3/272	6.5	NA	noncoding (38/98 nt)	RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	= 4127814	NA (NA)					noncoding (98/98 nt)	RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

TTCTTACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTT  >  CP009273/3262972‑3263261                                                                                                                                                   |                                                                                                                                                ttcttACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGc                                                                                                                                               <  2:661497/149‑1 (MQ=255)  gcgtACAAAGGCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGGGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGTCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCa                                                                                                                                              <  1:144257/146‑1 (MQ=255)      aCAAATTCTATGATTAATCACGTAGATAGTTATCCATCTTACCATTGGGACCAACAGCAAAAACCCACTGACGAGGGTTTGAAACGTATGGAAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCAACGCCATCTCTGCAatat                                                                                                                                          <  2:475834/149‑1 (MQ=21)           gTCTATTATTAATACCTGAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGa                                                                                                                                     <  1:644489/149‑1 (MQ=255)            tCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGCTGCGCTACGCTTATCCGGCCTACGCCATCTCTGCACTATATTGaa                                                                                                                                    >  2:102858/1‑149 (MQ=255)              tattatTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTCCGCCATCTCTGCAATATATTGAAtt                                                                                                                                  >  1:88159/1‑149 (MQ=255)               attattAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAAttt                                                                                                                                 >  2:538937/1‑149 (MQ=255)               attattAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTAATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAAttt                                                                                                                                 >  2:166344/1‑149 (MQ=255)                 tcttaATCCCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGc                                                                                                                               <  1:708046/147‑1 (MQ=255)                     aaTACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGc                                                                                                                           >  2:207166/1‑149 (MQ=255)                     aaTACCGTAGATATTTATTCATCGTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCAGCTCTGCAATATATTGAATTTGCGTGc                                                                                                                           >  1:403663/1‑149 (MQ=255)                      aTACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCCCTGCCATATATTGAATTTGCGGGCt                                                                                                                          >  2:568152/1‑149 (MQ=255)                         ccGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCCCTGCAATATATTGAATTTGCGTGCtttt                                                                                                                       >  2:130629/1‑149 (MQ=255)                          cGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTg                                                                                                                      <  1:99702/149‑1 (MQ=255)                                   ttattCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGa                                                                                                             >  2:220760/1‑149 (MQ=255)                                       tCATCTTACCCTGTGCACCAAAAGCTAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGTTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTCAATTTGCGTGCTTTTGTAGGCAGGATAAg                                                                                                         <  1:447708/149‑1 (MQ=255)                                          tCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCAATCTCTGCAATAAATTGAATTTGCGAGCTTTGGTAACCAAGATAAGTCg                                                                                                      >  2:507407/1‑149 (MQ=25)                                          tCTTACCCTGGGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCg                                                                                                      <  2:17652/149‑1 (MQ=255)                                              aCCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCa                                                                                                  <  1:736098/149‑1 (MQ=255)                                               cccTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAAGGAGGATAAGGCGTTCAc                                                                                                 >  2:231732/1‑149 (MQ=255)                                                  tgtgCACCAAAAGCAAAAACTCACTGACGCGGGATTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCAcgcc                                                                                              >  1:470254/1‑149 (MQ=255)                                                      cACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCAt                                                                                          >  2:565922/1‑149 (MQ=255)                                                        ccAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATcc                                                                                        >  1:708975/1‑149 (MQ=255)                                                        ccAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATcc                                                                                        >  1:709238/1‑149 (MQ=255)                                                        ccAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATcc                                                                                        >  1:516400/1‑149 (MQ=255)                                                          aaaaGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGGGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCCTCCgg                                                                                      >  2:292596/1‑149 (MQ=255)                                                           aatgccaagaCTCACTGACGCGGGTTCGAACCTGAGGCCACCCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATGTGTTGAATTCGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCACATCCGGc                                                                                     <  2:632819/140‑1 (MQ=17)                                                           aaaGCAAAAACTCGCTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGc                                                                                     >  2:511266/1‑149 (MQ=255)                                                           aaaGCAAAAACTCGCTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGc                                                                                     >  2:511272/1‑149 (MQ=255)                                                                  aaaCTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATa                                                                              >  1:424400/1‑149 (MQ=255)                                                                       cACTGCCGCGGGTTGGAAACGGAGGCCAACCGCAAAAATGCCTGATGCGCTACCCTTATCAGGCCTACGCCATCTCTGCAACATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAgcg                                                                         <  1:278848/149‑1 (MQ=18)                                                                         cTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCa                                                                       <  1:104354/149‑1 (MQ=255)                                                                              gcgGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGAGGCGCTACGCTTATCAGGCCTACGCCATCTCCACAATATATTGAAGTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACCcaa                                                                  >  2:482011/1‑149 (MQ=21)                                                                                     tGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCCATATATTGAATTTGCGTGCTTTTGTAGGCAGGATACGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATccg                                                           >  2:287977/1‑147 (MQ=255)                                                                                      gAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGa                                                          >  1:263328/1‑149 (MQ=255)                                                                                       aaaCTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAAATTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCCCATCCGGCCTGAATAAAGCGCACTCAACAAGCTGaa                                                         >  1:104070/1‑149 (MQ=255)                                                                                        aaCTGCTGGCAACCGCAAAAATGCCTGATCCGCTACGCTTATCAGGCCTACGCCATCTCTCCAATATACTGAATTTGCGTGCTTCTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGaaa                                                        <  1:225204/149‑1 (MQ=21)                                                                                        aaCTGATGGCGGCCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGaaa                                                        <  1:643685/149‑1 (MQ=255)                                                                                        aaCTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATAATGCATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGaaa                                                        >  2:18571/1‑149 (MQ=255)                                                                                         aCTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCACCAATCTGCAAc                                                       >  1:529643/1‑149 (MQ=255)                                                                                                gCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCgg                                                >  2:405064/1‑149 (MQ=255)                                                                                                    ccGCAAAAATGCCAGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCTCATCCGGTATGAATAAAGCGCACTCAACAATCTGATACCCGCCGGAACg                                            <  1:527769/149‑1 (MQ=255)                                                                                                        aaaaaTGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGAATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGttt                                        >  2:167525/1‑149 (MQ=255)                                                                                                         aaaaTGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTtta                                       >  2:384987/1‑149 (MQ=255)                                                                                                           aaTGCCTGCTGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTTAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTttatt                                     <  1:138807/149‑1 (MQ=255)                                                                                                                 tGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGtgc                               >  1:193853/1‑147 (MQ=255)                                                                                                                    agcgcTACGCTTATCAGGCCTACGCCATCTCGGCAATAGATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTttattcagataagg                            <  2:456992/148‑10 (MQ=21)                                                                                                                          aCGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGAGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTaa                      >  1:451784/1‑149 (MQ=255)                                                                                                                                  cAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGAcc              <  1:130629/149‑1 (MQ=255)                                                                                                                                    ggCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGa            >  1:233607/1‑149 (MQ=255)                                                                                                                                      ccTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATGCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATa          >  1:613555/1‑149 (MQ=255)                                                                                                                                       cTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATaa         >  2:239264/1‑149 (MQ=255)                                                                                                                                           gCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCg     >  2:23096/1‑149 (MQ=255)                                                                                                                                              aTCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGctt  >  1:552406/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                TTCTTACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGCCATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTT  >  CP009273/3262972‑3263261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.