New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4034043	38 (0.840)	10 (0.230)	5/292	5.7	18.4%	intergenic (+47/+223)	rrfA/mobB	5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
	?	CP009273	= 4203090	51 (1.150)					intergenic (+3/‑72)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGACGCCCGCCATAAACTGCCAGGCAT  >  CP009273/4033895‑4034164                                                                                                                                                     |                                                                                                                           cgGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTAt                                                                                                                            >  1:65222/1‑149 (MQ=34)      gtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCtgtt                                                                                                                       >  1:210964/1‑149 (MQ=35)            ccTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGttgtttgt                                                                                                                 <  1:131297/149‑1 (MQ=35)               gACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg                                                                                                              <  1:423236/149‑1 (MQ=35)               gACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCACGGGTTGGCGACTGGGCCTTTCGTTTTACCTGTTGTTTGTCgg                                                                                                              >  2:626319/1‑149 (MQ=11)               gACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTAATGCGAAAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTGAGTCGGAAGACTGGGCCTTTCGTTTTATCTGCTGCTTGTggg                                                                                                              >  2:82179/1‑149 (MQ=11)                    cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAc                                                                                                         <  2:652724/149‑1 (MQ=34)                           aaCTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTcc                                                                                                  >  1:358260/1‑149 (MQ=35)                            aCTCAGAAGTGAAACGCCGTAGCGGCGATGGTAGTGGGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCt                                                                                                 <  1:455975/149‑1 (MQ=25)                               cgaaaGTGCACCGCCGTACCGCCGCTCGTTGTGGGGGGTCTCCGCGTGGGAGAGTAGGGAACTGCCGGGCATCAAATAAAACGAATGGTTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAg                                                                                              <  2:92511/146‑1 (MQ=11)                               cctgaggcacaCGCCGTACCCTCGTCGGTATTGTGGGGTCTCCGCCTGCGAGAGTAGGGAACTGCCAGGCATCAAATAACACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAg                                                                                              <  2:24666/139‑1 (MQ=11)                                        aaCGCCGTAGCGCCGATGGTAGTGTGGGGGCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACaaa                                                                                     <  1:361951/149‑1 (MQ=25)                                        aaCCCCGTAGCGCCGATGGTCGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACaaa                                                                                     <  1:37540/149‑1 (MQ=25)                                                     cggcggTAGTGTGGGGTCTCGTCATGCAGGGGTAGGGAACTGCCAGGCATCACATAAAGCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGTGCg                                                                        <  2:453440/145‑1 (MQ=11)                                                           tAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAtctc                                                                  >  2:733495/1‑146 (MQ=25)                                                             gtgtGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAGGGCTCAGTCGGAAGACTGGGCCTTTCGGTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCGGCCGGGAGCGGATTTGaa                                                                >  1:179278/1‑149 (MQ=255)                                                                      ctcctcATGCGAGAGAAGGGAACTGCCAGGCATCCAATAAACCGCAAGGCTCAGTCGGACGCATGGGCCTTTCGTTTCATACGTTGTTTGTCGGTGAGCGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGCTTTGAACGTCGCGaa                                                       >  2:220753/1‑149 (MQ=11)                                                                         ctcATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCCCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCa                                                    >  2:631692/1‑149 (MQ=21)                                                                              gcggtagtagcacaCTGGCAGGCATCAAAGAAAACGAAAGGCTCGGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGGACGCTCTCCTGAGTAGGACAAATCCGCCGGGCGCGGATTTGAACGTTGCGAAGCATCGGc                                               <  2:343857/136‑1 (MQ=11)                                                                                gagaGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACATTGCGAAGCACCGGccc                                             >  2:69350/1‑149 (MQ=17)                                                                                    gTAGGGACCCGCCACGCACCAAATAAAACGAAAGGGTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAg                                         <  2:424676/149‑1 (MQ=11)                                                                                     gaGGGAACTGCCAGGCATCAAATAAAACGAGAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAgg                                        <  2:653898/148‑1 (MQ=17)                                                                                      aGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAggg                                       >  1:166139/1‑149 (MQ=32)                                                                                             tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCggg                                >  2:498743/1‑149 (MQ=32)                                                                                             tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCggg                                <  1:191326/149‑1 (MQ=32)                                                                                             tGCCAGACATCAAATAAAACAAAAGGCTCAGTCGGAAGACTGGGACTATTGATCTATTTGAGTTGTGTCGGTGAACACTCTCCCGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCACAGCGCCGGGGGGTgcaggg                                >  2:671447/1‑144 (MQ=14)                                                                                               ccAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGGGAAGCAACGGCCCGGAGGGgggcgggcg                              >  2:642742/1‑148 (MQ=17)                                                                                                   gCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAGGCTCTCCTGAGTAGGAAAAATCCGCCGGGAGCGGATTTGAACGTGGCGAAGCAACGGCCCGCAGGGGGGCGGGG‑Aggcc                         >  1:263029/1‑147 (MQ=11)                                                                                                        caaTAAAACGAAAGGCTCAGTCGGAAGATTGGGCCGTTCGTTTTCTTACGTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGAcgcccg                    <  1:168200/148‑1 (MQ=11)                                                                                                          cgggacgggcgggCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGAcgcccgcc                  <  1:435590/138‑1 (MQ=12)                                                                                                          aTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAAGGCcgccccc                   >  2:63250/1‑147 (MQ=12)                                                                                                          aTAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGAcgcccgcc                  >  2:63270/1‑149 (MQ=32)                                                                                                           tAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGcgtcctgcccgcca                  <  1:157705/149‑14 (MQ=255)                                                                                                            aaaaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGACGCCCGCCAt                >  2:2660/1‑149 (MQ=32)                                                                                                              aaCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGC‑AGGACGCCCGCCATaa              >  1:6542/1‑149 (MQ=17)                                                                                                                   aaGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGACGCCCGCCGTAAACTGc         >  1:298026/1‑149 (MQ=17)                                                                                                                        tCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGACGCCCGCCATAAACTGCCAGGc    >  1:461765/1‑149 (MQ=32)                                                                                                                         cAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGACGCCCGCCAGAAACTGCCAGGCa   >  1:631873/1‑149 (MQ=17)                                                                                                                          aGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGACGCCCGCCATAAACTGCCAGGCAt  >  1:106255/1‑149 (MQ=17)                                                                                                                                                     |                                                                                                                           CGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGC‑AGGACGCCCGCCATAAACTGCCAGGCAT  >  CP009273/4033895‑4034164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.