| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1972748 = | 0 (0.000) | 52 (1.160) | 33/294 | 0.4 | 100% | intergenic (‑294/‑486) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 2283592 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
GTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCAT > CP009273/1972600‑1972895 | cgggagaagaaaatctcttttctggtctgacggcgcttcctgctgaattcactggcggcgaaggccagttgatgcctcatgatcacccctgttctatggctccagatgacaaccatgatctcatatcagggacttgttcgcaccttcct > 2:56416‑M1/149‑149 (MQ=255)cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:556341‑M1/149‑149 (MQ=255)cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 2:471330‑M1/149‑149 (MQ=255)cgggacaacaaaatctcttttctggttgcacggcgcttactgctgaatccactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggatccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 2:37169‑M1/149‑149 (MQ=255) gggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:118473‑M1/148‑149 (MQ=255) gggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 2:696571‑M1/2‑1 (MQ=255) gggacaagaaaatcgcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 2:45641‑M1/148‑149 (MQ=255) gggacaagaaaagctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:172455‑M1/148‑149 (MQ=255) ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgttggcgaaggtaagttgatgactcatgatgaaccctgatctatggctccagatgacaaacatgatctcatatcagggacgtgttcgcaccttccTTa > 2:543729‑M1/147‑149 (MQ=255) ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 2:350366‑M1/3‑1 (MQ=255) ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggaacagttaactttttgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:537260‑M1/147‑149 (MQ=255) ggacaagaaaatccctttcctggtccgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:382242‑M1/147‑149 (MQ=255) gacaagaaaatctcttttctggtctgacggcgcttactgctgacttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacgtgtgcgcaccgtccTTaa < 1:291230‑M1/4‑1 (MQ=255) tACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCACAAAACACTCAATTACTTAAgg < 1:588131‑M2/149‑3 (MQ=255) aagaaaatctcgtttcgggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACAt > 2:70710‑M1/143‑149 (MQ=255) aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaccatattttcatatcagggacttgttcgcaccttccTTAACATaaa > 1:727705‑M1/140‑149 (MQ=255) tcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGtata < 1:694937‑M1/16‑1 (MQ=255) tcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagaggacaaacatgatctcatatcagggtcttgttcgcaccttccTTTACATATATGtata < 1:427359‑M1/16‑1 (MQ=255) aaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaa > 2:4468‑M2/1‑137 (MQ=255) tttatggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaacctgttctatggctccagatgacaaacatgatctcataccagggacttgttcgcaccttccTTAACATAAATGTAGAagg < 2:271957‑M1/19‑2 (MQ=255) gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAACCACTCACGTAGTTAAggacggtgcgaataagg < 1:553828‑M2/149‑18 (MQ=255) gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACt > 1:28414‑M1/125‑149 (MQ=255) cacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaa > 2:526337‑M2/1‑125 (MQ=255) acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACtattgt < 1:477085‑M1/30‑1 (MQ=255) gcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACttttgtttt < 1:183641‑M1/33‑1 (MQ=255) gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTgg > 2:691202‑M1/115‑149 (MQ=255) gcttactgctgaattcactgtcggagcaaatgagttgtggactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATAATTTTGTTTTgg < 2:709578‑M1/35‑1 (MQ=255) tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctc > 2:732308‑M2/1‑117 (MQ=255) aactttcccAAATCGACCCAACTGTACCCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggct > 2:182875‑M2/4‑113 (MQ=255) tgctgaattctctgtcggcgaaggtaatttgatgactcatgatgaacctcgtgctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTAt > 1:124459‑M1/109‑149 (MQ=255) ttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc < 2:346955‑M1/48‑1 (MQ=255) cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt > 1:694085‑M2/1‑100 (MQ=255) gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAg > 1:271957‑M1/92‑149 (MQ=255) aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 1:194250‑M2/1‑93 (MQ=255) tggattcgtcaCTACACTGACATACAACGGACGGGGGCGGCGATTTTCAATAATGCGTGATGCAGAGCACACAAAACACTCAACTACGTAAggaaggtgcgtataagcggtgaaattcttctcggctgactcagtcatttcatttcttc > 2:158257‑M2/6‑91 (MQ=255) tGTACGCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 2:399082‑M2/1‑91 (MQ=255) tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattatccgcggctgactcagtcatttcatttcttcat > 1:178014‑M2/1‑89 (MQ=255) taagttgttgactcatgatgaaccctgttctatggctccagatgataaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg > 2:73954‑M1/85‑149 (MQ=255) aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaatcagctggtaaattcttctcggctgactcagtcatttcatttcttcatg > 1:288663‑M2/1‑88 (MQ=255) gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCAGTTAAAAAGTTTTTcgcta < 1:198975‑M1/68‑1 (MQ=255) tgactAAAAGCACATACAACGGAGGGGGTCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTGCTTAAggtaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga > 1:166192‑M2/3‑83 (MQ=255) tCAGTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATGAGGCGTGATGAAGAGCACACAAAACCCTCAATTACTTAAggaaggtgcgaataagcggggaacttctttccggccgactcagtcattgcttttcttcatggtgga > 2:616525‑M2/1‑83 (MQ=255) cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAACCACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag < 1:103225‑M2/149‑68 (MQ=255) aCTACACGCACATACCACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc > 2:581610‑M2/1‑81 (MQ=255) tgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTGAATCTGTTAAAAAGTTTTTcgctacgcta > 1:518872‑M1/77‑149 (MQ=255) actcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGTGTGTATTTTATACTGTTAACAAGTTtttcgctacgctggc < 2:48149‑M1/75‑4 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa < 1:545015‑M1/77‑1 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGGTTTTCGCTACGCTagcaa < 2:436860‑M1/77‑1 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTCTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa < 2:339561‑M1/77‑1 (MQ=255) acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactccgtcatttcatttcttcatgtttgagccgatt < 2:110443‑M2/149‑74 (MQ=255) catgatgaaccctgttctatggctccatatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATAAATGTATAAGTCATCCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag > 1:512562‑M1/72‑149 (MQ=255) gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttaagacgatttt < 2:217651‑M2/149‑76 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg > 1:117021‑M1/64‑149 (MQ=255) ccctgttctattgctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTTTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa > 1:436920‑M1/63‑149 (MQ=255) aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg < 2:103868‑M2/149‑84 (MQ=255) aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg < 2:158026‑M2/149‑84 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGGTCCGCTAGCAAGCAAAAATGaa < 1:146204‑M1/88‑1 (MQ=255) ttgttctatggctccagaagacaaacatgatctcatatcagggactttttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa > 2:426094‑M1/61‑149 (MQ=255) tgttctatggctccagatgacaaacatgaactcatatcagggacttgttcgcaccttccTTAACATAAATATATAAGTCATACTTTTGTTTGGGATTGATTTCACTCTGTTAGAAAGTTTTGCGCGACGGTAGCCAGCAAAAATgaaaa < 1:517620‑M1/90‑2 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa > 1:458050‑M1/59‑149 (MQ=255) gggCTGCGATTTTCAATAATGCGTGAGGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcct > 2:161102‑M2/1‑57 (MQ=255) atggctccagatgacaaacatgatctcaaatcagggacttgttcgcaccttccTTAACATAAATGTAGAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat < 1:443815‑M1/96‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTGAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata < 2:453133‑M1/97‑1 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACACCACATTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccggttttttctcccgtaaatgccttg < 2:489062‑M2/149‑95 (MQ=255) gctccagaggacaaacatgaactcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAGATAAAAAGAAAAAATGAAACAGGaataat > 2:546333‑M1/51‑149 (MQ=255) gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaat < 2:174009‑M2/149‑98 (MQ=255) ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc > 1:3196‑M2/1‑48 (MQ=255) ataatGCGTCATGCAGATCACACAAAACACTCAATTACTAAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt < 2:433190‑M2/149‑108 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg < 1:655751‑M1/111‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt < 1:488358‑M1/112‑1 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTTTCTTTTCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTGgcgc < 2:23128‑M1/117‑1 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccg < 1:495940‑M2/149‑114 (MQ=255) ctcatatcagggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca > 2:75306‑M1/30‑149 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttatcccgtaaatgccttcaatcagcctatttagacagtttg < 1:151510‑M2/149‑118 (MQ=255) tCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcaggcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatccgcctctttagaccgtttcttcgcaa < 2:644255‑M2/149‑125 (MQ=255) ggacttgttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcgcacagtacacataa > 2:527586‑M1/20‑141 (MQ=255) caAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaa > 1:525058‑M2/1‑20 (MQ=255) ttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTGACTCTGTTAAAAAGTTTTTCGCTCCGCTAGAAGGGAAAAATGAAACAGGAATAATCGAAGTGGTTTGGTGGGCACAGTCAAAATAATTAACCg < 2:613632‑M1/137‑1 (MQ=255) ttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg < 1:426479‑M1/137‑1 (MQ=255) ttcgcaccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg < 2:407117‑M1/137‑1 (MQ=255) tCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttat < 1:376311‑M2/149‑138 (MQ=255) ccttccTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTCACAAGCAAAAATGAAACAGGTATAATCGAAATGGGATGTAGCGCACAGCCAAAATAAATCACCGTAaata < 2:80298‑M1/143‑1 (MQ=255) aTTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccc < 1:264375‑M2/149‑141 (MQ=255) aTTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccc < 1:264298‑M2/149‑141 (MQ=255) cTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagt > 2:553055‑M2/1‑5 (MQ=255) | GTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCAT > CP009273/1972600‑1972895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |