New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	14 (0.310)	34 (0.850)	30/264	0.4	69.0%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	18 (0.450)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

AATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCT  >  CP009273/1204924‑1205205                                                                                                                                       |                                                                                                                                                    aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccccacg                                                                                                                                       <  2:364117‑M2/149‑15 (MQ=255) aaTTTATATGTCGGATAAGCCTTGGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacc                                                                                                                                       <  2:502670‑M2/149‑15 (MQ=255)     tatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg                                                                                                                                   <  2:434371/149‑1 (MQ=255)      atttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggt                                                                                                                                  <  2:107629‑M2/149‑20 (MQ=255)        ttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt                                                                                                                                <  1:77189‑M2/149‑22 (MQ=255)           tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcg                                                                                                                             >  2:518553‑M2/1‑125 (MQ=255)            cGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga                                                                                                                            >  2:304182‑M2/1‑124 (MQ=255)              gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                          >  2:720123‑M2/1‑122 (MQ=255)              gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAACCTGTGGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa                                                                                                                          >  1:651813/1‑149 (MQ=255)              gATAAGCCGTTGCCAGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgaga                                                                                                                          >  1:674026‑M2/1‑122 (MQ=255)               aTAAGCCTTTGTCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                         <  2:164954/149‑1 (MQ=255)                tAAGCCTTTGCCAGTTCCGGGTATCCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                                        <  2:382774/149‑1 (MQ=255)                    ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag                                                                                                                    >  1:266280/1‑149 (MQ=255)                     cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccctaaccaaggttttcgagagccgttt                                                                                                                   >  1:546647‑M2/1‑115 (MQ=255)                          ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgcttgccca                                                                                                              <  2:86240‑M2/149‑40 (MQ=255)                           cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagatccgtttgcacag                                                                                                             <  2:532352‑M2/149‑41 (MQ=255)                             gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg                                                                                                           >  2:231037‑M2/1‑107 (MQ=255)                                 cGGGTATTCTTCAGCAGACAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat                                                                                                       >  1:251534‑M2/1‑103 (MQ=255)                                             agcagGAAAAGCGGCACGCTTGCATTCCAGCCGGCCTGTTGGCGGAGTGGCTGAAGGGCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccataccaaggttttcgagggccgtttgcacggggccatccgatttgatat                                                                                           >  2:49607‑M2/1‑91 (MQ=255)                                             agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAGTAACAAGCAAATGGcatcatac                                                                                           >  1:440731/1‑147 (MQ=255)                                                agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc                                                                                        <  2:511117‑M2/149‑62 (MQ=255)                                                     aacccgcaccaTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGCGcctgctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac                                                                                   >  1:52339‑M2/6‑83 (MQ=255)                                                       gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgg                                                                                 <  2:403418‑M2/149‑69 (MQ=255)                                                         ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa                                                                               <  1:608333/149‑1 (MQ=255)                                                            aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattct                                                                            <  2:225021‑M2/149‑74 (MQ=255)                                                               aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccagaccaaggttttcgcgggccgtttgcacagtgccatccgatttgatatcgccaaactgattcttgc                                                                         <  1:245521‑M2/149‑77 (MQ=255)                                                                      ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGTCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTATATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                  <  1:493735/149‑1 (MQ=255)                                                                            caggcTGTTGCGGGAGTCGCTGAAGGCCACGGAACCTGGATACCAACTGTTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                            <  2:533241/149‑1 (MQ=255)                                                                            cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggctttcgagagccgtttgcacagtgccatccgctttgatatcgccaaacggattcttgcggcttaacagcag                                                            <  1:4086‑M2/149‑90 (MQ=255)                                                                             agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcagtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagc                                                           >  1:219632‑M2/1‑59 (MQ=255)                                                                                 tGTAGGTGGAGCCGCTGAAGCCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                       <  1:643673/149‑1 (MQ=255)                                                                                         ccgtggccttcagCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcg                                               >  1:582275/13‑149 (MQ=255)                                                                                             ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                           <  1:708659‑M2/149‑107 (MQ=255)                                                                                                tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAATTAACATGCTTATTGGCTATGTACGCGTATca                                        >  2:412599/1‑149 (MQ=255)                                                                                                  aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaac                                      <  1:468893‑M2/149‑112 (MQ=255)                                                                                                  aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                      <  1:364117/149‑1 (MQ=255)                                                                                                       cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtg                                 <  2:614391‑M2/149‑117 (MQ=255)                                                                                                            aaCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtgactcgtcgtgcg                            <  2:345574‑M2/149‑122 (MQ=255)                                                                                                             aCCGGGACACGAACAGGTAATGCAGAGCCTTCTCCCAAAGCAAGGTTTATGAATATGAAGAAATAACAAGGAAGTGGCATCATTCTTGCTTTTAACAGGGGGATTTAACATGCTTAATGGCTATGTACGCGTGTCAACGAATGATCAGa                           >  2:405989/1‑149 (MQ=255)                                                                                                              ccGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgc                          >  1:443842‑M2/1‑26 (MQ=255)                                                                                                              ccGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttacggcttaccagcagcgcgcgaattgcggtgagtaactggtcgtgcggc                          <  2:17270‑M2/149‑124 (MQ=255)                                                                                                               cGGGACACCAACAGGTAATGCAGAGccttctctcaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaagtggtcgtgccgcc                         >  1:502670‑M2/1‑25 (MQ=255)                                                                                                               cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaggtaactgggcgtgcggcc                         <  2:510885‑M2/149‑125 (MQ=255)                                                                                                                 ggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAGATGGCCTCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaaaag                       >  1:487803/1‑146 (MQ=255)                                                                                                                   acacCAGCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcaatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccctt                     <  2:518282‑M2/149‑129 (MQ=255)                                                                                                                       cAACAGGTAATGCAGAGCCCTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTGTTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt                 >  1:113615/1‑149 (MQ=255)                                                                                                                              tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg          <  1:275001‑M2/149‑140 (MQ=255)                                                                                                                              tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg          <  1:321581‑M2/149‑140 (MQ=255)                                                                                                                              tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg          <  1:173195‑M2/149‑140 (MQ=255)                                                                                                                              tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtatccacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg          <  1:655108‑M2/149‑140 (MQ=255)                                                                                                                                 tGCAGAGccttctcccaaaccaaaggtttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaactaactggtcgggccgccccctctccaggctggcac       <  1:410868‑M2/149‑143 (MQ=255)                                                                                                                                     gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAACGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAAATCTCCaagagaaggcgc   >  2:691251/1‑139 (MQ=255)                                                                                                                                      agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggat  >  1:511117‑M2/1‑2 (MQ=255)                                                                                                                                      agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt  >  2:732597/1‑149 (MQ=255)                                                                                                                                       |                                                                                                                                                    AATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCT  >  CP009273/1204924‑1205205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.