| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2707710 = | 42 (0.930) | 4 (0.090) | 4/282 | 6.1 | 8.2% | noncoding (69/98 nt) | RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 2939352 = | 50 (1.170) | intergenic (‑151/+88) | tcdA/mltA | tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA/membrane‑bound lytic murein transglycosylase A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGTTTTCAGCACCCAGACACGTCCATAG > CP009273/2939204‑2939500 | cACCTCCGAATTAAGAAGGTCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa > 2:88644/1‑149 (MQ=255)cACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGTTTTGTAGGCCGGATAAGGCGTCCACGCCGCCTCCGGCa > 1:358726/1‑149 (MQ=255) aCCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATCTTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt > 1:535475/1‑149 (MQ=255) aCCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt < 2:136074/149‑1 (MQ=255) ccTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg < 1:485768/149‑1 (MQ=255) tCATAATCAAAAAGGGCGAGGTTATCCCGCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTCGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa < 1:1095/149‑1 (MQ=255) tCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa > 1:291156/1‑149 (MQ=255) aaTTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaacaac < 1:284931/149‑1 (MQ=255) ttAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTCGGCCGGCTAAGCCGTTGACGCGGCATCCGGAATGcacggcgc > 1:167136/1‑144 (MQ=25) aaaaaGGGCGAGGTTATCCCTCACCCTAAACGCATAAAGGCCTGATGCGCTACGCGTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGAATCGTAGGCCGGATAAGGGGTTCACGCCGCATCCGGCATGAACAACgcgc > 2:472088/1‑149 (MQ=25) aaaaaGGGCGACATTATCCCTCACCCTAAACGCATAAATGGCTGAGGCGCGACGCTTATCAGGGCTACATGACACCTGCAATATTTTGGATTTGCCTGATTTGTAGGCCGGAAAAGACGTTCACGCCGCATCCGGCATGAACAACgcgc > 2:480285/1‑149 (MQ=21) aaaGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCAc > 1:509759/1‑149 (MQ=255) ggtgagggataaccTCGCCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAg > 1:639089/13‑149 (MQ=21) gCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTCCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGt < 1:494558/149‑1 (MQ=255) cGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTc < 1:293563/149‑1 (MQ=255) tCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCa < 2:262100/149‑1 (MQ=255) aCCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACCTAGTCAATAACCAGGAtgt > 2:148168/1‑149 (MQ=255) ccTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGATCACGCCGCATCCGGCATGAACAACGCGCACTTAGGCAATAATCAGGATGTGa > 2:619699/1‑149 (MQ=255) tAAACGCATACATGCCTGATGCGCTACTCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAgg < 2:161164/149‑1 (MQ=255) tAAACGCATAAATGCCTGATGCGTCACGATTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAgg < 1:494003/149‑1 (MQ=255) gCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCCCTTAGTCAATAATCAGGATGTGAGGTTAcc > 1:716640/1‑149 (MQ=255) gCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTGTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTAcc < 2:31426/149‑1 (MQ=255) cATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTAccc < 1:506239/149‑1 (MQ=255) atgccctagtcgcgACGCTTATCAGGCCTACATACCTCCTGCACTCTTTTGGATTTGCATGATTTGTAGGCCGGATACGGCGTTCACGCCGCATCCGGCATGACCAACCCGCACTTAGTCAAGCTTCAGGATGTGAGGTTCCCCCTCAc < 2:49733/139‑1 (MQ=18) tGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTCGGCCGGATAGGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTCAGTCAATAATCAGGATATACGGTTGACCCTCACCCTGt > 2:202685/1‑149 (MQ=21) tGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGGGGTTACCCCTCACCCTGTCat < 2:404851/149‑1 (MQ=255) cgcTACCGTTTTCGGGCCTACATATCTCCTGCAATATTGTGGATTTGCATGATTTGTAGGCCGGAGAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCatat < 1:62276/149‑1 (MQ=37) aTCAGCCCTACCTCACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACTCCTCTCCCTGTCATATCCGTAAAAAc < 2:589290/149‑1 (MQ=37) gCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCAt > 1:733171/1‑149 (MQ=255) gCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCAt > 2:55037/1‑149 (MQ=255) cTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATAc < 1:401743/149‑1 (MQ=255) aTAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGaa > 2:510223/1‑149 (MQ=255) tCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCCTCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCGGTCATATCCGTAAAACCCGCATACAGAATATca > 1:336544/1‑149 (MQ=255) tCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAGCAACGCGCGCTTAGTCAATAATCAGGATGTGAGGTTACCCCGCACCCTGTCATATCCGTAACAACGGCATACAGAATGTca > 2:483042/1‑149 (MQ=37) accTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGCTAATGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTGAATAATCAGGATGTGAGGTTACCCCTGACCCTGTCATATCAGTAAAAACGACATCCAGAatgtaa > 2:346848/2‑145 (MQ=37) tGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGGTGTGAGGTTACCCCTCACCCTGTCCTATCCGTAGACGCGGCATACAGAATGTCACAt > 1:64707/1‑149 (MQ=37) cAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCACCCAGCATATCACATCa > 1:417859/1‑149 (MQ=255) cAATATTTTGGATTTACATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACAACTGACGCCGTCATGTCCGTAAAAACGGCATACAGAATATCACATCa > 1:500608/1‑149 (MQ=37) aTGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTAc > 1:341863/1‑149 (MQ=255) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGcc > 2:137340/1‑149 (MQ=255) ggCTGGATACGGCGCCCGCGCCGCATCCGGCATGCACACCGCGCACTGAGTCAATAAGCAGGATGGGAGGTTGCCCCTCACCCTGTCACATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCgg < 2:1722/149‑1 (MQ=255) tccGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCCCACTTAGTCAATAATCAGGATGTGATGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCggg < 2:424365/148‑1 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACCGAATATCCCATCAGCCGCTAAAGACGTTACCCGCGCCCggg > 1:300451/1‑149 (MQ=255) gCCGGATAACGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCggg > 2:292225/1‑149 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGtt < 1:116315/149‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGtt < 1:55037/149‑1 (MQ=255) ttCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGTTTTCAGCa < 2:639089/149‑1 (MQ=255) ccgcATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAACCGCCATGCAAAAGGTCACATCAGCCGCTAAAGACGTCACCTGCGCCCGGGGCGGTTTTCAGCACCCAgg > 1:171688/1‑148 (MQ=255) ccgcATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCGGCTCCCGGGGCGGTTTTCAGCACCCAGa < 2:341863/149‑1 (MQ=255) cgcATCCGGCATGAACAACGCGCACCTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGCCGTTACCTGCGCCCGTGGGGGTTCTCAGCCCCCCGac > 1:411620/1‑149 (MQ=255) cGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGTTTTCAGCACCCAGACACGTcc > 2:314667/1‑149 (MQ=255) cATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTCCCCCTCACCATATCGCATCTTCAAAATCGGAATAATGTAGATCACATCAGCCGCTAATGGCGCGAACACCCCCTGGGCCGGGTTCCGGCACCCAGACACGTCCaga > 1:174160/1‑147 (MQ=255) cATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGTTTTCAGCACCCAGACACGTCCATa < 1:711380/149‑1 (MQ=255) aTGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGGCATCTCCGTAAAACCGGCATACAGAATATCACATCAGCCGCTAAAGACGTCACCTGCGCCCGGGGCGCTCTCCAGCCCCCAGACACGGcccaag > 2:166920/1‑145 (MQ=255) | CACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAACGCGCACTTAGTCAATAATCAGGATGTGAGGTTACCCCTCACCCTGTCATATCCGTAAAAACGGCATACAGAATATCACATCAGCCGCTAAAGACGTTACCTGCGCCCGGGGCGGTTTTCAGCACCCAGACACGTCCATAG > CP009273/2939204‑2939500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |