New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2939345 =	52 (1.160)	4 (0.090)	4/282	6.1	8.4%	noncoding (91/97 nt)	RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	3669555 =	38 (0.890)					noncoding (75/161 nt)	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGG  >  CP009273/3669411‑3669702                                                                                                                                                  |                                                                                                                                                    tggctTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATTCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGc                                                                                                                                                 <  2:581884/149‑1 (MQ=255)     ttGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTc                                                                                                                                             >  1:95106/1‑149 (MQ=255)          gTTAATCGCTCTGCTGCTCACCCATGAGACGCGACATCAGTCGTTGTAATAAGCG‑GAGAAGACCTTAGGCGCTCCGCTTATCAGGCCTGAATTTCCATACCATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                        <  1:536474/149‑1 (MQ=37)          gTTAATCGCCCTGCTGCTGACCCATTACACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                        <  1:682398/149‑1 (MQ=255)           ttAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgccg                                                                                                                                       <  2:549383/149‑1 (MQ=255)               tCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGGTAAGGCGTTCACGCCGCATc                                                                                                                                   >  1:676271/1‑149 (MQ=255)                  cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                                                                                <  2:291211/149‑1 (MQ=255)                   ccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCGACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGCTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                                                               >  1:493555/1‑149 (MQ=255)                            gACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGATTATCTGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACaaa                                                                                                                      <  1:171897/149‑1 (MQ=255)                               ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGATCGAGATCCAACCGGCATGAACAACGca                                                                                                                   >  2:701272/1‑149 (MQ=37)                               ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGAGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACCAAGca                                                                                                                   >  1:252095/1‑149 (MQ=255)                                      aCGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGCTGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTg                                                                                                            <  1:343386/149‑1 (MQ=255)                                       cgcgACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc                                                                                                           <  2:97349/149‑1 (MQ=255)                                          gACACCAGTCGTTGTAATACGAGGGAAAAT‑CCCGATGCGCCACGCTTATCAGGCCTGAATTCCCATTCAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa                                                                                                        <  2:20337/149‑1 (MQ=25)                                                       gTAATAAGAGTGAAAAG‑CCTGATGCACTACGCTTCTCAGGCCTGAATTTCAATACAATATAATGAACTCGCAAGGATTTGTAAGCCGGATAAGTCGTTCACCCCGCCACCGGCCTGAACAAAGCACACTTTGCcaaacacacaaaccga                                                                                           >  2:22865/1‑136 (MQ=255)                                                        taataaGGCTGAAAAG‑CCTGAATCGCCACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGt                                                                                          <  2:278672/149‑1 (MQ=25)                                                           taaGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCGGTTTa                                                                                       >  2:150132/1‑149 (MQ=255)                                                                   aaaaG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCgg                                                                               >  1:699967/1‑149 (MQ=255)                                                                     aaG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCgggt                                                                             <  1:631310/149‑3 (MQ=255)                                                                           tGATGCGCTACGCTTATCAGGCCTGAGTTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAg                                                                        <  1:682665/149‑1 (MQ=255)                                                                           tGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAg                                                                        <  1:388741/149‑1 (MQ=255)                                                                              tGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTTCCGGATTGCAGAcc                                                                     >  1:114098/1‑148 (MQ=255)                                                                              tGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGCCa                                                                     >  2:244295/1‑149 (MQ=255)                                                                                      gattATCAGGCCTGAAGTTCCATACGATATATTGAATTCGCAAGGATTTGTAGGTCGGATAAGGCGTTCACGCCGCACCCGGCATGAACATAGCACACTTTGCCAACAATCTCAATCTGTTTAATTGCCGGATGTCAGACATCCGGCaa                                                             <  1:629933/147‑1 (MQ=37)                                                                                      gCTTATCATGCCTGAATTTCCATACAATATCTTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCaa                                                             <  1:243980/149‑1 (MQ=255)                                                                                       cTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAt                                                            >  1:690415/1‑149 (MQ=255)                                                                                       cTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAAt                                                            <  2:95106/149‑1 (MQ=255)                                                                                          aTCAGGCCGGAATTTCCATACAATATATTGAATTCGCCAGGATTTGCAGGCCGGATAAGGCCTTCACGCCGCCTCCGGCATGAACAAAGCACACTTTGCCAACAATCCAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTat                                                         <  2:54718/149‑1 (MQ=39)                                                                                               gCCTGAATTTCCATACAATATATTGTATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTAtcatca                                                    <  1:549591/149‑1 (MQ=255)                                                                                                  tGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACACCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCActt                                                 >  2:543296/1‑149 (MQ=255)                                                                                                    aaTTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGGTAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGGCGGATGTCAGCCATCCGGCAATTATCATCActtct                                               >  2:566238/1‑149 (MQ=255)                                                                                                                      tGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACCTTGCCAACAATCTACATGTGTTTAATTGCCGGATGGCAGTCATCCGGCACTTATCATCACTTCGTCATCTACGACAAAATCg                             >  1:206851/1‑149 (MQ=37)                                                                                                                        gaTTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTc                           <  2:38198/148‑1 (MQ=255)                                                                                                                            cGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATATCAGACATCCGGCAATTATCATCACTTCTTCATCTCCGAAAAAATCGTCCGac                       >  1:415258/1‑149 (MQ=255)                                                                                                                             gCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGaca                      >  2:261551/1‑149 (MQ=255)                                                                                                                               aaGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACt                    >  1:108811/1‑149 (MQ=255)                                                                                                                                   aTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGAtt                >  2:52038/1‑149 (MQ=255)                                                                                                                                          tgCCGGATGCGGCGTGAACGCCTTATCCGGCATGAACAAAGCACACTTTGCCAACAATATACATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTAGCAGCACTTCTTCATCTGCGACAAAGTCGTCAGACACTGATTTGCCTcc         >  2:447476/2‑149 (MQ=37)                                                                                                                                          ggCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGACTcc         >  2:182699/1‑149 (MQ=255)                                                                                                                                           gCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTccc        >  2:157585/1‑149 (MQ=255)                                                                                                                                                 tAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGCCACTGATTAGCCGCCCCTTCgg  >  1:204278/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    TGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAG‑CCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAATTATCATCACTTCTTCATCTGCGACAAAATCGTCCGACACTGATTAGCCTCCCCTTCGG  >  CP009273/3669411‑3669702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.