New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 287112	NA (NA)	9 (0.500)	9/270	NT	33.3%	noncoding (1/768 nt)	IS1	repeat region
	?	CP009273	= 2269346	18 (1.000)					coding (595/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family

TCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCA  >  CP009273/286980‑287260                                                                                                                                     |                                                                                                                                                     tCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCGGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAg                                                                                                                                            >  2:171481/1‑143 (MQ=25)           cTTTTGCCGTGACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGt                                                                                                                            <  1:132270/149‑1 (MQ=255)                              ccccGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTCCCTATGTCGAATATCTgg                                                                                                         >  1:2986/1‑149 (MQ=255)                              ccccGTCAGGAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTgg                                                                                                         <  1:53533/149‑1 (MQ=255)                                ccGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAatat                                                                                                             <  2:186035/143‑1 (MQ=255)                                                aggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAACTCCGTAAGTTGGCAGCATAACCGCATTTTCAGCACGGATGTTTCACGAGCCTATGTCGAATATCTGGCCGTTAAGGTTg                                                                                             >  2:281332/1‑143 (MQ=18)                                                      gACAGCTGATAGAAACAGACGCCACTGGAGCACCTCAAAAAAACCATCATACCCTAAAGTCGTAATTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCCCGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATc                                                                                       <  2:115596/143‑1 (MQ=25)                                                           cTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCTTCATACACTAAGTCAGTAAGTTGGCGGCACCACCGAATTTCCAGCCCTGATGCTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGagaa                                                                                  <  2:146387/143‑1 (MQ=25)                                                                 gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATCAGGTTGCGGATCGAGAAGAGGATGCagag                                                                      >  1:303045/1‑149 (MQ=255)                                                                                       cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCaa                                                      >  2:23127/1‑143 (MQ=255)                                                                                       cTCAAAAACACCATCATACACTAAATCAATAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTAACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGGAGCaa                                                      >  2:164121/1‑143 (MQ=255)                                                                                           aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCAt                                                  <  2:176870/143‑1 (MQ=255)                                                                                                      atACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCgtg                                       <  2:259380/143‑1 (MQ=255)                                                                                                       tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGGTGCGGATCGAGAAGAGGATGCAGAGGACTATCTGGAGGCAATCATGGAGGCTCgtgt                                      >  2:213869/1‑143 (MQ=255)                                                                                                                             agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATATGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATg          <  1:312397/149‑1 (MQ=255)                                                                                                                             agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTACGGATCGAGAAGAGGATGCAGGAGAATATCTGGAAGCAATCATGGAGGCACGTGTTACGGTTGCCGGCAAGGGGCTg                >  2:62294/1‑143 (MQ=255)                                                                                                                                   aCCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATAATGGAGGCTAGTGTTACCGTTGCTGGCATGGGGCTGGTGaag          >  2:77988/1‑141 (MQ=255)                                                                                                                                     cGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCa  <  1:102464/149‑1 (MQ=255)                                                                                                                                     cGAATTTTCAGCCCGGATGTTTCAAGTAACTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGGATGGGATGCAGCGGAATATCTGGAAGCAATCATGGAGGCTAGGGTTACCGTTGCTGGCATGAGGGTGGAGATGAAggggaa  >  1:42577/1‑145 (MQ=255)                                                                                                                                     cGAATTTGCAGCCCCGTTGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCa  <  1:180212/149‑1 (MQ=255)                                                                                                                                     |                                                                                                                                                     TCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCA  >  CP009273/286980‑287260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.