New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1933356 =	NA (NA)	6 (0.100)	5/276	8.8	NA	noncoding (1/30 nt)	REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	CP009273	1933386 =	NA (NA)					intergenic (+38/+93)	pykA/lpxM	pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
Rejected: Coverage evenness skew score above cutoff.

TATAAGCGCAAAGATCTTTATCCCATCAAATAAAAAAGCCTCTCGCGAGGAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1933511‑1933356 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccggcCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGCCCGGTTT  >  CP009273/1933386‑1933532                                                                                                                                                                                                                                                                                                                 TATAAGCGCAAAGATCTTGATCCAATCAAATAAAAAAGCCTCTCGCGAGGAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGC                                                                                                                                                            <  1:422993/149‑1      GCGCAAAGATCTTTATCCCATCAAATAAAAAAGCCTCTCGCGAGGAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCG                                                                                                                                                       >  1:178884/1‑149      GCGCAAAGATCTTTATCCCATCAAATAAAAAAGCCTCTCGCGAGGAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGC                                                                                                                                                            >  2:958824/1‑144       CGCAAAGATCTTTATCCCATCAAATAAAAAAGCCTCTCGCGAGGAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTCAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGG                                                                                                                                                      >  1:305159/1‑149                                                                         GTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCA                                                                                         >  2:873873/1‑144                                                                                                             ACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGA                                                <  1:954439/149‑1                                                                                                                                  GGATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGAGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCT                           >  1:1041426/1‑149                                                                                                                                   GATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTT                          >  1:49740/1‑149                                                                                                                                    ATGTGGCGTTTTCGCCGCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGCTCTTTGCGCTTA                         >  1:76611/1‑149                                                                                                                                                CGCCCCATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCT                  <  2:329027/144‑1                                                                                                                                                        CCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGTTTTTTTATTTGATGGGACAAAGATCTTTGCGCTTATACGGCTGGAGTTCG          <  2:594141/144‑1                                                                                                                                                           GCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGAACTCTCAATTTGGTGGGATAAGGATCTTTGCGCTTATACGGCTGGTTTTCGCCCGGTTT  >  1:537403/1‑149                                                                                                                                                                                                                                                                                                                 TATAAGCGCAAAGATCTTTATCCCATCAAATAAAAAAGCCTCTCGCGAGGAGAGGCCTTCGCCTGATGATAAGTTCAAGTTTGCTTCAGAATATTCGAAATCTGTTGAACTATCATTGAACTGTAGGCCGGATGTGGCGTTTTCGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1933511‑1933356 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccggcCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGCCCGGTTT  >  CP009273/1933386‑1933532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.