New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	277607 =	73 (1.110)	5 (0.080)	5/276	8.8	7.0%	coding (88/1155 nt)	yagA	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
	?	CP009273	277634 =	64 (1.030)					coding (61/1155 nt)	yagA	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGATGTCGTCAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACT  >  CP009273/277462‑277753                                                                                                                                                  |                                                                                                                                                   gTGATGTCGTCAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCTAGCGCTGGTGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGtt                                                                                                                                                 <  1:678950/149‑1 (MQ=255)  tGATGTCGTCAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCAGTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTc                                                                                                                                                <  1:772754/149‑1 (MQ=255)   gATGTCGTCAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGAt                                                                                                                                                    <  2:599304/144‑1 (MQ=255)     tGTCGTCAGATGGGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGcc                                                                                                                                             <  1:511003/149‑1 (MQ=255)     tGTCGTCAGATGAGCGGGTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGt                                                                                                                                                  <  2:92160/144‑1 (MQ=255)         gtcAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTCGCCGGTGGAAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGc                                                                                                                                              >  2:49806/1‑144 (MQ=255)         gtcAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGGTCGCCCCGt                                                                                                                                         >  1:978743/1‑149 (MQ=255)         gtcAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCCGAAGCCCCGCGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGcccccg                                                                                                                                         >  1:263381/1‑147 (MQ=255)          tcAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTc                                                                                                                                        <  1:1114978/149‑1 (MQ=255)                gAGCGGTTCGGGGAATGGTGCGGCATGCGCGGGCGGTGCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGa                                                                                                                                  >  1:714506/1‑149 (MQ=255)                 aGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCt                                                                                                                                      <  2:114182/144‑1 (MQ=255)                   cGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCGGAGGGGACGGATGTTCGCCCCGTCCTGCGAGGc                                                                                                                               >  1:65779/1‑149 (MQ=255)                    ggTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCGAGCGCAGGAGACACTTGTAGCCGGTGGCAGGTGAAATGGCGAAGCGACGGCAGAGGGAACGGATGTTCGGCCCGTTCTGCGAGGCg                                                                                                                              >  1:175972/1‑149 (MQ=255)                     gTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGGGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGGAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGa                                                                                                                                  >  2:836920/1‑144 (MQ=255)                             aaTGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGaaca                                                                                                                          <  2:391600/144‑1 (MQ=255)                               tGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGaacaaa                                                                                                                        <  2:911702/144‑1 (MQ=255)                               tGGTGCGGAATGCGCGGGCGGGCCTGAAGACCGGCGGTACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAacaaaacaaa                                                                                                                   <  1:814028/149‑1 (MQ=255)                                 gTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGaacaaaac                                                                                                                      <  2:575660/144‑1 (MQ=255)                                    cGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGTTGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAg                                                                                                              >  1:775081/1‑149 (MQ=255)                                       aaTGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTc                                                                                                                >  2:847501/1‑144 (MQ=255)                                           cgcgGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTaa                                                                                                       <  1:1013022/149‑1 (MQ=255)                                            gcgggcggTGCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAAt                                                                                                      <  1:481736/149‑1 (MQ=255)                                                  ggTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGAAATg                                                                                                >  1:6055/1‑149 (MQ=255)                                                      cTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAACCAAACTCAGTACGAAATGACATGGtgg                                                                                            >  1:8921/1‑147 (MQ=255)                                                       tGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATg                                                                                                <  2:740193/144‑1 (MQ=255)                                                          agcgcggcggCATCTTCCTGAGCCCAGCGCGGGAGCCATTTTTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGACCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTAtctct                                                                                        <  1:277882/145‑1 (MQ=255)                                                          aGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGGGCCATTTTTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTAtctct                                                                                        <  1:865231/149‑1 (MQ=255)                                                           gACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCTGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTAt                                                                                            <  2:639222/144‑1 (MQ=255)                                                             ccGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCCCTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACCCAGTACGTAATGACATGGTATCTCTCGc                                                                                     <  1:881973/149‑1 (MQ=255)                                                               ggcggcACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTAtctct                                                                                        <  2:984472/144‑1 (MQ=255)                                                                    cACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGCCATGGTATCTCTCGCAt                                                                                   <  2:587339/144‑1 (MQ=255)                                                                    cACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAg                                                                              <  1:143881/149‑1 (MQ=255)                                                                        ttCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCCGGGCa                                                                          >  1:274367/1‑149 (MQ=255)                                                                         tccggcgCCCAGCGCTGGAGCCACTTGCAGCCGGTGGCAGGTGAAATGCCGCCGCGACGCCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCAt                                                                         <  1:260592/143‑1 (MQ=255)                                                                         tCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGcct                                                                         >  1:69495/1‑147 (MQ=255)                                                                         gccTGAGCCCTGCGCGGGGGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAg                                                                              <  2:950181/143‑1 (MQ=255)                                                                             gAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGc                                                                     <  1:369988/149‑1 (MQ=255)                                                                                cccAGCGCTGGAGCCACTTGTAGCCGGTGAAACGATTAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATaa                                                                       >  2:991894/1‑144 (MQ=255)                                                                                 ccggcggTGGGGCCACTTGTAGGCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGGCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACt                                                                 <  1:530631/146‑1 (MQ=255)                                                                                 ccAGCGCTGGAGCCACTTGTAGCCGGTGGCAGCTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACt                                                                 <  1:18475/149‑1 (MQ=255)                                                                                  cAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGGGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGc                                                                     >  2:608670/1‑144 (MQ=255)                                                                                  cAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAAAGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTc                                                                <  1:483722/149‑1 (MQ=255)                                                                                  cAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTAAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTc                                                                >  1:820398/1‑149 (MQ=255)                                                                                        ttgggCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTcc                                                               <  2:499043/140‑1 (MQ=255)                                                                                        tGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGATATCTCTCGCATCCCAGGGCATAAGCGACTCCATaaa                                                          <  1:725704/149‑1 (MQ=255)                                                                                           aGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGAAGAGGGAACGGATGTTCGCCCCGTCCGGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACgg                                                       <  1:885641/149‑1 (MQ=255)                                                                                             ccACTTGTAGCCGGTGGCAGGTGAACTGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATaaa                                                          >  2:317804/1‑144 (MQ=255)                                                                                               aCTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTTAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTc                                                   <  1:552272/149‑1 (MQ=255)                                                                                               aCTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACg                                                        <  2:896755/144‑1 (MQ=255)                                                                                               aCTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTc                                                   <  1:196576/149‑1 (MQ=255)                                                                                                  tGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTa                                                <  1:899271/149‑1 (MQ=255)                                                                                                      gCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGcc                                            >  1:662529/1‑149 (MQ=255)                                                                                                       ccGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGCGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAGGCGACTCCATAAACGGGTTCttc                                                >  2:437891/1‑143 (MQ=255)                                                                                                       ccGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTa                                                >  2:425052/1‑144 (MQ=255)                                                                                                        cGGTGGCCGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGCCTCCATAAACGGGTTCTTAt                                               <  2:595916/144‑1 (MQ=255)                                                                                                         ggTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCGGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATg                                              <  2:351863/144‑1 (MQ=255)                                                                                                                ggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAACCTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTaa                                  <  1:601795/149‑1 (MQ=255)                                                                                                                ggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTCGTTGTaa                                  >  1:328913/1‑149 (MQ=255)                                                                                                                ggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTaa                                  <  1:55603/149‑1 (MQ=255)                                                                                                                 gTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCACTACGTAATGACATGGTATCCCTCGCATCCCAGGGCATAAGCGACCCCATAAACGGGCTCTTATGCCCTCGtt                                      >  2:21197/1‑144 (MQ=255)                                                                                                                           gAAGCGACGGCAGAGGGAAGGGATGTTCGCCCCGTCGTGCGAGGCGAAAAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCt                            <  2:703532/144‑1 (MQ=255)                                                                                                                           gAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCt                            <  2:527224/144‑1 (MQ=255)                                                                                                                               cGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAACCTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTcc                   <  1:1024726/149‑1 (MQ=255)                                                                                                                               cGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCa                        >  2:900303/1‑144 (MQ=255)                                                                                                                                 aCGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCGTATCAACCCGAAATCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTcccc                 >  1:1099146/1‑149 (MQ=255)                                                                                                                                 aCGGCAGAGGGAACGGATGTCCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTTATTACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTcccc                 <  1:539973/149‑1 (MQ=255)                                                                                                                                   ggCAGGGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTc                    <  2:239666/144‑1 (MQ=255)                                                                                                                                    gCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTcc                   >  2:531056/1‑144 (MQ=255)                                                                                                                                    gCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGaa              <  1:926168/149‑1 (MQ=255)                                                                                                                                         gggAACGGATGTTCGCCCCGCCCTGCGAGGCGAACAAAACAAACTCAGTACTTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAgt         <  1:869073/149‑1 (MQ=255)                                                                                                                                              cgcaTGTTCGCCCCGTCCTTCGGGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTCTGACTCGGGTGTAAGTGTCTACCATGTCCCCGAACAAgt         <  2:724604/141‑1 (MQ=255)                                                                                                                                                gATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAgtgt       >  2:328119/1‑144 (MQ=255)                                                                                                                                                gATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACt  <  1:785479/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GTGATGTCGTCAGATGAGCGGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACT  >  CP009273/277462‑277753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.