New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1522721	2 (0.050)	4 (0.100)	4/282	6.1	67.4%	pseudogene (563/2037 nt)	rhsE	pseudogene, Rhs family protein
	?	CP009273	= 1522733	NA (NA)					pseudogene (575/2037 nt)	rhsE	pseudogene, Rhs family protein
Rejected: Coverage evenness skew score above cutoff.

CGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAAC  >  CP009273/1522575‑1522728                                                                                                                                                   |        cGGGTGGAATGACAGCGGCGACCGGGTGGGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCcggcgg       <  2:382666/149‑1 (MQ=12)      ggAATGCCAACGGCGACCTGGTGCGCATCAGCGGCCCGCGCCAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAAc  <  2:259197/149‑1 (MQ=17)                                                                                                                                                   |        CGGGTGGAATGACAACGGCGACCTGGTGCGCATCAGCGGCCCGCGACAGACGCGGGAATACGGCTACAGCGCCACGGGCAGGCTGGAGAGTGTGCGCACCCTCGCACCAGACCTGGACATCCGCATCCCGTATGCCACGGACCCGGCGGGCAAC  >  CP009273/1522575‑1522728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.