| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3770693 | 55 (1.290) | 3 (0.070) | 3/288 | 6.1 | 5.7% | intergenic (+306/‑66) | yibL/lldP | ribosome‑associated DUF2810 family protein/L‑lactate permease |
| ? | CP009273 | = 3770732 | 46 (1.110) | intergenic (+345/‑27) | yibL/lldP | ribosome‑associated DUF2810 family protein/L‑lactate permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCCTACCAATTCTTCGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGT > CP009273/3770550‑3770837 | cccTACCAATTCTTCGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACgtg > 2:429643/1‑149 (MQ=255) cTACCAATTCTTCGCTTATCTGACCTATGAGGGCA‑ATTTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTCCAACTTTTACCCAACGtgtg > 2:494178/1‑149 (MQ=255) tACCAATTCTTCGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGa < 1:638531/149‑1 (MQ=255) aCCAATTCTTCGATTATCTGACCTTTG‑GTTCACAATTTCACGCATTAAAA‑TCACATCAGTTATTTTATGACAGTACTGTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTCCCACTTTTACACAACGTGTGAc > 2:490991/1‑149 (MQ=255) ccAATTCTTCGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACa < 1:367704/149‑1 (MQ=255) aaTTCTTCGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAg < 1:401895/149‑1 (MQ=255) tcGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATg < 1:270568/149‑1 (MQ=255) tcGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATg < 2:141552/149‑1 (MQ=255) cggttATCTGACCTCTG‑GTTCCCAATTTC‑CCAGTTAAAACTCACATCGATGTTGCCAATACATAACATTTAGTTAACCTTTCGTTGTCATTATCCCTACTCATCACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGa < 2:170704/146‑1 (MQ=255) gCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAg < 1:593854/149‑1 (MQ=255) tCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACa > 2:13195/1‑149 (MQ=255) gACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTACTTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGAc > 2:420343/1‑149 (MQ=255) aCCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACt > 1:435120/1‑149 (MQ=255) ctctG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCCTTCATTGTCATTATCCCTACACAACACAATTGGCAATGCCACTCTTAGCCAACGTGTGACAAGGAGATGAGCAACAGACGCa > 1:128802/1‑149 (MQ=255) ctctG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCa < 2:418788/149‑1 (MQ=255) tcttgcacaATGTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTa < 2:170914/144‑1 (MQ=255) ttaacaATTTC‑CCAATTAAAACTCACATCAATGTTACCAATACATAACATGTAGTTAACGACTCAGTGTCATTATCCCTACACAACACAATTGGCAGCGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTacac > 1:277338/4‑149 (MQ=255) ttCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCCATTTTCCACAACGTGTGACAAGGAGATGAGCAACAGACTCATTacac > 1:301674/1‑149 (MQ=255) ttCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTacac > 2:508835/1‑149 (MQ=255) aacaATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGCCTCATTACACGa > 2:430204/2‑149 (MQ=255) tttacaaaTTAAAGCTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGc < 2:550812/143‑1 (MQ=255) c‑ccAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTg > 1:437335/1‑149 (MQ=255) c‑ccAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTg > 1:431768/1‑149 (MQ=255) cAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGa < 2:10690/149‑1 (MQ=255) aaaCTCACATCAATGTTTCCAATACATAACAGTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAg < 2:3792/149‑1 (MQ=255) acaTCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGAcc > 2:524685/1‑149 (MQ=255) aTCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAAGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTg > 2:158381/1‑149 (MQ=255) tCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGc > 1:282899/1‑149 (MQ=255) aaTACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGAGCTGCAATGAATctct > 1:434115/1‑149 (MQ=255) aTAACATTTCGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGCGGACTCCAGGAGACCTGCAATGAATCTCTGGcaa > 1:610945/1‑149 (MQ=255) aTAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCCCTGGcaa > 1:610881/1‑149 (MQ=255) aTAACAGTTACTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGcaa < 1:467003/149‑1 (MQ=255) tAACATTTAGTTAACCATTCAGTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACTTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGcaac < 2:269035/149‑1 (MQ=255) aCATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGCTGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGcaacaa > 1:385553/1‑149 (MQ=255) tAGTTAACCATTCATTGTCATTATCTCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTa < 1:520352/149‑1 (MQ=255) tAGTGAACCCGTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATGACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTa < 2:13354/149‑1 (MQ=255) acttAACCATTCATTGTCATTATCCCCACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTAc < 2:610348/147‑1 (MQ=255) gTTAACCATTCATTGTCATTATCCCTACAGAACACAATTGGCAGTGCCACTTTGACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACTCTATGTGCGTGGACTCCAGGACACCTGCAATGAATCTCTGGCAAAAAAACTACg > 2:381534/1‑149 (MQ=255) aCCATTCATGGTCATTATCCCTACCCAACACAATCGGCAGTGCCACTTTTACACAACGTGTGACTAGGAGATGAGCAACAGCCTCATTACACGATGTGCGTGGACTCGAGAAGACCTGCAATCAATCCCTGACAACAAAACTACGATct > 2:549408/1‑148 (MQ=255) ccATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATccc < 1:459834/149‑1 (MQ=255) attcattGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCccgc < 1:429643/149‑1 (MQ=255) ttGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAACCTCTGGCAACAAAACTACGATCCCGCCGGGa > 2:191614/1‑149 (MQ=255) tATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTg < 1:326752/149‑1 (MQ=255) ccTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGCTGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCtt > 2:323773/1‑149 (MQ=255) ccTACACAAAACAATTGGCAGTGCCATTTTTATAGCTCGTGTGACAAGGTACAGCGCAAAAAAATCGTTACAAGTTGTGCATGGACTCTTGGAGACGTACAACCAGTCTTTGTGAACAAAACTACGATCCCGCCGGGAATCTCTGGAtt > 2:26410/1‑149 (MQ=255) cTACATAACACAATCGGCAGTGCCACTTTTACACACCGTGTGACAAGGAGATGAGCAACCGCCACATTACACGATGTGCGTGGACCCCAGGAGACCGGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCttt < 2:8439/149‑1 (MQ=255) aacacaaTTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTc > 2:589908/1‑149 (MQ=255) acaaTTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGa > 1:548428/1‑149 (MQ=255) caaTTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGAt < 1:13195/149‑1 (MQ=255) ttGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGc > 1:587760/1‑149 (MQ=255) aGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGc > 1:142130/1‑149 (MQ=255) tGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATGGCATCGCtt > 1:479413/1‑149 (MQ=255) gacACTTTTACCCAACGTGTGACAAGGGGCTGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTc < 2:611545/147‑1 (MQ=255) gCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCCTTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTc < 1:572481/149‑1 (MQ=255) acacAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGt < 2:435120/149‑1 (MQ=255) | CCCTACCAATTCTTCGCTTATCTGACCTCTG‑GTTCACAATTTC‑CCAATTAAAACTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAATGAATCTCTGGCAACAAAACTACGATCCCGCCGGGAATATCTGGCTTTCCAGTCTGATAGCATCGCTTCCCATCCTGT > CP009273/3770550‑3770837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |