New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4511181 =	58 (1.360)	4 (0.100)	4/284	5.5	6.9%	coding (657/1350 nt)	yjhF	putative transporter
	?	CP009273	4511198 =	52 (1.270)					coding (640/1350 nt)	yjhF	putative transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTC  >  CP009273/4511050‑4511342                                                                                                                                                     |                                                                                                                                                 tAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCgag                                                                                                                                                  >  1:406618/1‑149 (MQ=255) tAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCAGGATCATTGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCgag                                                                                                                                                  >  2:177239/1‑149 (MQ=255)   aaaTAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCgagag                                                                                                                                                <  1:11638/149‑1 (MQ=255)    aaTAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCGGAATCGGCGGGTCGCGCCgagaga                                                                                                                                               >  1:275800/1‑149 (MQ=255)          ccTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGCTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGCGGatat                                                                                                                                         >  1:88429/1‑149 (MQ=255)           cTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTGCGCATTCGCTGAGTCGGCGGGTCGCGCCGAGGGAGGCtata                                                                                                                                        >  1:471760/1‑149 (MQ=255)                tCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTccc                                                                                                                                   <  1:206135/149‑1 (MQ=255)                tCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTccc                                                                                                                                   <  2:252684/149‑1 (MQ=255)                   gcgGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCCGCATTGCCGTGAGGAAACTGATCCCCAAGACTGGCATTTGGATTTCGCTGACTCGGCCGGGTGCACCCTGAGAGACAATTGTCCCctc                                                                                                                                >  2:478642/1‑149 (MQ=255)                    cgGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTGTATTCCCctct                                                                                                                               >  2:624957/1‑149 (MQ=255)                       cACTTTTGGCAGGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCtttt                                                                                                                            <  2:375179/149‑1 (MQ=255)                            ttGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTaaa                                                                                                                       <  1:69213/149‑1 (MQ=255)                            ttGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGCCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTaaa                                                                                                                       <  1:46398/149‑1 (MQ=255)                                              atgatgGTGACAACCGCCATCAGGACCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATgcg                                                                                                     <  1:557250/149‑1 (MQ=255)                                                tatgGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCt                                                                                                   <  2:587710/148‑1 (MQ=255)                                                 atgGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCCCTTTTTTAAAGGCGCCCGGAAAAAGGCGCTg                                                                                                  >  2:468721/1‑149 (MQ=255)                                                      gACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGa                                                                                             <  1:685601/149‑1 (MQ=255)                                                      gACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGCCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTTATTGCTTCCAGAACACTGCGCCCGCAGa                                                                                             >  2:513332/1‑149 (MQ=255)                                                        cAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAAt                                                                                           <  2:363896/149‑1 (MQ=255)                                                         aaCCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGGGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAAtt                                                                                          >  1:253516/1‑149 (MQ=255)                                                         aaCCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAAtt                                                                                          >  2:509004/1‑149 (MQ=255)                                                          aCCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATCATGCGCCGGCAGAGttt                                                                                         >  2:244335/1‑149 (MQ=255)                                                            cGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTAt                                                                                       <  1:177239/149‑1 (MQ=255)                                                             gCCATCAGGATCACCCGCAGCATTGCCGTAACAAAACTCATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGCGCCGCGCCAAGAAACCCTATATTCCCCCCTTTTTTAAAGGCGTCCGGAATAATGCCCTGGCAGAATTTAtt                                                                                      <  2:441986/149‑1 (MQ=255)                                                              ccATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTc                                                                                     <  2:504725/149‑1 (MQ=255)                                                                  cAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATa                                                                                 <  2:436958/149‑1 (MQ=255)                                                                    ggATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCATCCGGAATAACGCGCTGGCAGAATTTATTCAATAcc                                                                               >  1:449818/1‑149 (MQ=255)                                                                              cagcaTTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCaaa                                                                     <  1:149935/149‑1 (MQ=255)                                                                                gcaTTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGTTTTATTTCCTTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGa                                                                   <  1:187716/149‑1 (MQ=255)                                                                                     gCCGGGAGAAAACTGACCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATaaa                                                              <  2:79924/149‑1 (MQ=255)                                                                                       cGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAggaacacgg                                                            >  2:428675/1‑141 (MQ=255)                                                                                         tGAGACAACGGACCCCAGAGCCTGGCATTTCGCTTTCGCTGCATCGGCGGGTCGCGCGGCGAGAAGCTAGATTCCCCTTTGTTTTAAAGACGTCCGGAATAATGCGCTGGCAGAAGTTATTCAATACCGGGCCGCAAAGAATAAAGGtt                                                          <  2:88429/149‑1 (MQ=255)                                                                                         tGAGAAAACTGGTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGtt                                                          <  2:471760/149‑1 (MQ=255)                                                                                             aaaaCTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGaa                                                      >  1:266674/1‑149 (MQ=255)                                                                                             aaaaCTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGAGACGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTAGTCAATACCGGGCCGCCAAGCATAAAGGGTGGaa                                                      >  2:115599/1‑149 (MQ=255)                                                                                                   gATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCCGGTCGCGCCGAGAGAGGCTATATAGTTTTATGGTTCAAAGGAGTACGGAAGAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGa                                                <  1:509004/149‑1 (MQ=255)                                                                                                    aTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCCATACCGGGCCGCAAGGGCTAAAGGGTGGAATGGCGAc                                               >  2:633792/1‑149 (MQ=255)                                                                                                    aTCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGaaggacgga                                               >  1:508025/1‑142 (MQ=255)                                                                                                       ccAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATGTTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCGGCCAAt                                            >  1:24647/1‑149 (MQ=255)                                                                                                       ccAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAAt                                            <  1:31393/149‑1 (MQ=255)                                                                                                       acaaattctttcATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAAt                                            <  2:660961/138‑1 (MQ=255)                                                                                                        cAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAACGGTCGGAATGCCCACCAtc                                           >  2:680041/1‑148 (MQ=255)                                                                                                        cAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGCCCGCAAAGAATACAGGTTGGAATGCGGAGAATg                                           >  2:357910/1‑149 (MQ=255)                                                                                                             ccTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGGGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATAcc                                      <  2:253516/149‑1 (MQ=255)                                                                                                             ccTGGCATTTCGCTTTCGCCGAATCGGCGGGTCGCGCGGAGAGAGGCTATATTCCCCTCTTTTTTAACGGCGTCCGGAACAATGCGCTTGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGCCAATGATAcc                                      <  2:266082/149‑1 (MQ=255)                                                                                                              cTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGCGAGAGGCTATATTCCCCTCTTTTTTAACGGCGTCCGGAATAATGCGCCGGCAGAATTTATTCAAAACCGGGACGAAAACAATACAGGTTGGAATGCTGACAATGATACCg                                     <  2:63590/149‑1 (MQ=255)                                                                                                               tGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGGTACCgg                                    >  1:100840/1‑148 (MQ=255)                                                                                                                      tcgctttcgctGTATCGGCGGGTCGCGCCGAGATAGGCTATATTCCCCTCTTTTCTGAAGGCGGCCGGAATAATGCGCTGGCAGAATTGATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAg                             <  2:419894/149‑1 (MQ=255)                                                                                                                          tttcgctGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTCTTCAATACCGGGCCGCAAAGAATAAAGATAGGAATGGCGACAAGGATTACGAATATCAGTAcc                         >  2:395984/1‑149 (MQ=255)                                                                                                                           gtcgcgGAAACGGCGGGTCGCCCCGAGAGAGCCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAACGCGCTGGCATAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCa                        <  1:633792/148‑1 (MQ=255)                                                                                                                              gctGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATc                     <  1:62915/149‑1 (MQ=255)                                                                                                                                tGAATGGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCt                   <  2:462175/149‑1 (MQ=255)                                                                                                                                    tcagcagatcccgcCGAAAGAGGCCTTGTTCCCCTCGTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACAt               <  1:502060/138‑1 (MQ=255)                                                                                                                                                 ccGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTc  <  1:468721/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TAAAATAAGCCTGAATCCGCGGCACTTTTGGCATGAGTCATCTGGATGATGGTGACAACCGCCATCAGGATCACCGGCAGCATTGCCGTGAGAAAACTGATCCCAAAGCCTGGCATTTCGCTTTCGCTGAATCGGCGGGTCGCGCCGAGAGAGGCTATATTCCCCTCTTTTTTAAAGGCGTCCGGAATAATGCGCTGGCAGAATTTATTCAATACCGGGCCGCAAAGAATAAAGGTTGGAATGCCGACAATGATACCGTATATCAGTACCAATCCTACATCAGCGCCATATTC  >  CP009273/4511050‑4511342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.