| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 2,860,429 | Δ1 bp | coding (482/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,860,427 | 0 | T | . | 99.2% | 568.1 / ‑2.4 | 126 | coding (484/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (61/64); minor base G (1/0); total (62/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 | |||||||||||
Only 100 of 131 total aligned reads displayed.
CGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCA > CP009273/2860279‑2860570 | cGGTTGACGGCATCAACTTGATTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGt < 1:1771314/149‑1 (MQ=255) gCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttg < 2:1412602/149‑2 (MQ=255) cTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttgg < 1:203886/149‑3 (MQ=255) gACGTCATCAACTGTCTTATCCACTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCTCGTGCG‑CTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGttggtt < 2:1344836/149‑5 (MQ=255) atcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAAt > 2:1673318/1‑149 (MQ=255) atcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAAt > 1:1906737/1‑149 (MQ=255) tcaACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATc < 1:1043300/149‑1 (MQ=255) aaCTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTTGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGc < 1:1731295/149‑1 (MQ=255) cTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGccc < 2:315061/149‑1 (MQ=255) cTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGCCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGccc < 1:817821/149‑1 (MQ=255) tGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCg > 1:209438/1‑149 (MQ=255) gtttATCCAGTTGCGCTGCGATCTCCTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGtt < 2:336398/147‑1 (MQ=255) gCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGtt < 2:27655/149‑1 (MQ=255) tATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑ATTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCaa > 1:1342009/1‑149 (MQ=255) aTCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTACGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAAt < 2:499004/149‑1 (MQ=255) tCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCCATc > 2:884928/1‑149 (MQ=255) aGTCGCTCTGCGATCTCTTCCGCACTTGGTTCATGGCCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTc < 2:330493/149‑1 (MQ=255) tggCTCTGCGACCTCTTCCGCACTGGGTGCATGGTCCAGCTTATGGGACAACTC‑CGGGCGTGTCCTCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTg < 1:947673/147‑1 (MQ=255) gCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGc > 1:707892/1‑149 (MQ=255) tctGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGa > 2:526245/1‑149 (MQ=255) tGCGCTCTCTTCCGGCCTTGGTCCATGGTCCCGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGCTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAAt < 1:28886/149‑1 (MQ=255) tGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATGGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGCAt > 1:1034266/1‑149 (MQ=255) tGCGATCCCTTCCGCACTGGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GGTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAAGAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAAt < 2:95151/149‑1 (MQ=255) gCGATTTCTTCCGCACGTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATc < 2:1840855/149‑1 (MQ=255) gCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGCATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATc > 2:945223/1‑149 (MQ=255) ctctTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATccacca > 2:399490/1‑149 (MQ=255) ttCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATGGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGGTCAATCGGCGGGCGCATCCACGAgat > 2:797423/1‑147 (MQ=255) ttCCGCAATTGGTGCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTGAACGTTCAGCTCCTTGACGATGTGAATCGGCAAACGAATAGTACGGG‑GTGGTTCATAATCGCCCGTTCAAGCGTCTGGCGAATcccgccggt > 2:660819/1‑142 (MQ=255) tCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtt < 1:1673318/149‑1 (MQ=255) ccacACTTGGTTCATGGTCCAGCTCATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTGCTTAACGATGGTAATCGGCAAACGACGAGGACGGG‑TTGGTTCATCAGCGCCACTTCCACCGTCTGGCGAAtacgcccggctg > 2:706023/4‑138 (MQ=255) ccGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGtta > 2:1247261/1‑148 (MQ=255) cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAt < 2:209438/149‑1 (MQ=255) cTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTAt < 1:1231224/149‑1 (MQ=255) ggTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGtt < 2:1171611/149‑1 (MQ=255) gTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAGCGCATCGTACGGG‑TTGGTTCATAAACGCCCGTTCAATCGTCTGGCGGAACCACGCGGGTGCGTAtagtg > 2:79183/1‑145 (MQ=255) ttCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCGCGTTCAATCGTCTGGCGAAGCCACCAGGTTGCGTATGTTga > 1:1871399/1‑149 (MQ=255) tCATGGTCCAGCTTATGGGACAACTCACGTGCA‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgag < 2:1107625/149‑1 (MQ=255) cATGGTCCAGCTTATGGGACAACTCGCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTgaga < 2:314099/149‑1 (MQ=255) tCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCGGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCATCTGCCGAATCCAGCAGGCTGCGCATGTTGAGAAGCgg > 2:974878/1‑149 (MQ=255) tCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGACCGTACACTCGTCTGGTGAATCCACCAGGTTGCGTATGTTGAGAAGCgg > 1:1337598/1‑149 (MQ=255) ccAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGa > 2:444456/1‑149 (MQ=255) ccAGCTTAGGGGACAACTCACGTGCG‑GTCCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGa < 1:410682/149‑1 (MQ=255) aGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGaaa < 2:675267/149‑1 (MQ=255) gtacacCTCACGGGCG‑GTTCGCAGGTAAAGGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTCCAAGCGTCTTGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTc < 2:1740676/147‑1 (MQ=255) ggACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGGATCGGCAACCGAATAGTAAGGG‑GTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAACAGAGCAGGTAGCAGATCTTGAGAAGCGGAAGCCACGTTc > 2:1232461/1‑149 (MQ=255) cAACTCTCGTGCT‑GTTCGCAGGTAAACGCTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGCTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCgg < 1:85902/149‑1 (MQ=255) aaCTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCggg < 2:1920113/149‑1 (MQ=255) aCTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCAAGTTCCgggg > 1:1231703/1‑148 (MQ=255) cTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGta > 2:1345687/1‑148 (MQ=255) cTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTc < 2:725577/149‑1 (MQ=255) tCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGAACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCa > 1:556856/1‑149 (MQ=255) aCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaaa < 1:106159/149‑1 (MQ=255) aCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaaa < 1:399490/149‑1 (MQ=255) aCGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCaaa < 2:1670574/149‑1 (MQ=255) gTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGt > 2:1536307/1‑117 (MQ=255) gTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGt < 1:1536307/117‑1 (MQ=255) gTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACt > 2:1545754/1‑149 (MQ=255) gTGCG‑GATCGCAGGTAAACATTCAGCTACTTTACGGTGTTGATGGGCAGGCGAAGAGGACGGG‑TTGTGTCATAGTCGGCCGTTCAATGGTCTGGCTGATCAACCAGGTTGCGTATGGTGAGACGCGGAAACCACGTTCCGGGTCacgca > 2:1835007/1‑145 (MQ=255) g‑gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTtctc > 1:1349605/1‑149 (MQ=255) g‑gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTtctc < 1:934353/149‑1 (MQ=255) g‑gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGAGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTgctc > 1:679184/1‑149 (MQ=255) cgcttCGCAGGGAACCTTCCAGCTTCTTTACGATGTGAATCGCGAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCGGGCGAATCCACCAGGTTGCGTATGGTGAGAAGCGGAAACCACGTTCCGGGTCAAACTtct < 2:1183685/146‑1 (MQ=255) gTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTctct > 1:627688/1‑149 (MQ=255) tCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGGTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCAGGGTCAAACTTCTCTAc > 2:1835731/1‑149 (MQ=255) cAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTGTGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTCCTCTACcgc > 1:916041/1‑149 (MQ=255) gTAAACGTTCGGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACcgcgcg < 2:102212/149‑1 (MQ=255) gTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAAACGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAGGCGGAAACCACGTTCCGGGTCAAAATtccctcccccccg > 1:873768/1‑144 (MQ=255) aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATc > 1:1544167/1‑149 (MQ=255) aCGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATc < 2:627688/149‑1 (MQ=255) cGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCa < 2:1906737/149‑1 (MQ=255) gTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGGCAAACTTCTCTACCGCGCGGATCAg < 1:1940944/149‑1 (MQ=255) cTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGtt < 1:1296629/149‑1 (MQ=255) cTTTACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACATCTCTACCGCGCGGATCAGCCCCAGGtt < 2:1937540/149‑1 (MQ=255) tttACGGTGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg < 2:331904/149‑1 (MQ=255) tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGACTCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCCCTACCGCGCGCATCAGCCCCAGGTTg > 1:1443532/1‑149 (MQ=255) tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTTTGTTGAGACGCGGAAACCACGTTCCGGGTCGACCTTCTCTACCGCGCGGGTCAGCCCCAGGTTg > 2:953975/1‑149 (MQ=255) tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg < 1:635470/149‑1 (MQ=255) tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg < 2:1342009/149‑1 (MQ=255) tttACGATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTg > 2:105089/1‑149 (MQ=255) gATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGCTGCCctc > 2:1806440/1‑149 (MQ=255) gATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGCGTCAGCCCCAGGTTGCCatc > 2:887355/1‑149 (MQ=255) gATGTGAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGGCAAACTTCTCTACCGCGCGGACCAGCCCCAGGTTGCCctc > 1:793368/1‑149 (MQ=255) tgtgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTTCCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCtt < 1:945223/149‑1 (MQ=255) tgtgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAACCCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCtt < 1:878086/149‑1 (MQ=255) tgtgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCtt < 1:688813/149‑1 (MQ=255) tgAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCTGATCAGCCCCAGGTTGCCCTCTTCg < 1:1178464/149‑1 (MQ=255) gAATCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTTGGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGa > 1:154384/1‑149 (MQ=255) gAAGCGGCGAACGGATAGTACGGG‑TTGGTTCAGAGTCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGGGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGa < 2:763121/149‑1 (MQ=255) aTCGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATa < 2:707892/149‑1 (MQ=255) cGGCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAg < 1:599555/149‑1 (MQ=255) ggCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGTCCCAGGTTGCCCTCTTCGATAAgg < 1:1467175/149‑1 (MQ=255) ggCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGTCCCAGGTTGCCCTCTTCGATAAgg < 1:1467079/149‑1 (MQ=255) gCAAACGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAggg > 2:577914/1‑148 (MQ=255) aaaCTAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGTGACAACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAAGTTGCCCTCTTCGATAGGGGcc > 1:1437939/1‑149 (MQ=255) aaCGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCa < 2:1544167/149‑1 (MQ=255) aCGAATAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGAGCAGCCCCAGGTTGCCCTCTTCTATAAGGTCCAg > 2:783573/1‑149 (MQ=255) aCGAATAGTACGGG‑TTGGTCCATACTCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAg < 1:3564/149‑1 (MQ=255) aaaTAGTACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGCGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGCATCGGCCCCAGGTGGCCCTCTTCCATAAAGTCAAGCa > 2:382889/2‑149 (MQ=255) aaTAGGACGGG‑GTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCaa < 2:1651132/149‑1 (MQ=255) tACGGG‑TTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCCGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCa > 2:1800747/1‑149 (MQ=255) | CGGCTGACGTCATCAACTGGCTTATCCAGTTGCTCTGCGATCTCTTCCGCACTTGGTTCATGGTCCAGCTTATGGGACAACTCACGTGCG‑GTTCGCAGGTAAACGTTCAGCTCCTTTACGATGTGAATCGGCAAACGAATAGTACGGGTTTGGTTCATAATCGCCCGTTCAATCGTCTGGCGAATCCACCAGGTTGCGTATGTTGAGAAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCA > CP009273/2860279‑2860570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |