New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 221460	44 (0.370)	17 (0.150)	7/282	15.7	28.7%	noncoding (1203/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	CP009273	2723331 =	NA (NA)					noncoding (1186/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

AGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  CP009273/221324‑221525                                                                                                                                         |                                                                  aGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTGCg                                                       >  1:1276749/1‑149 (MQ=17) aGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACg                                                       >  1:899350/1‑149 (MQ=32)   cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGCGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACCAc                                                     >  1:70252/1‑149 (MQ=17)    tCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGAcc                                                    >  1:1765707/1‑149 (MQ=32)    tCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGCGATGACGTCAAGTCATCATGGCCCTTACGAca                                                    >  2:1364280/1‑148 (MQ=17)      gtgtTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  <  2:1137244/149‑1 (MQ=32)      gtgtTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATAACGTCAGGGCATCATGGCCCTTACGACCAg                                                  >  1:45111/1‑149 (MQ=12)        gttgtGAAAGGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAggg                                                <  2:362149/149‑1 (MQ=17)           gtgAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTa                                             <  2:529861/149‑1 (MQ=32)           gggAAATGTTGGGGTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTa                                             <  2:1861241/147‑1 (MQ=17)              aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGTAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACATCAAGTCATCATGGCCCTTACGACCAGGGCTacac                                          <  1:1089280/149‑1 (MQ=17)                 ggTTGGGTTAAGCCCCGTACCGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACg                                       <  2:277408/148‑1 (MQ=12)                  gTTGGGTTAAGTCCCGCAACCAGCGCAACCCTTATCTTTTGCTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAATTCATCATGGCCCTTACGACCAGGGCTACACACGt                                      <  1:1587909/149‑1 (MQ=12)                   ttGTGTTAAGTCCCGCAACGAGCGCAACCCTCATCTTTTGCTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCGAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  2:545250/149‑1 (MQ=255)                   ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGACGGGAACTCAAAGGAGACTGCCAGTGCTAAACTGGAGGAAGGTGGGGATGAAGACAAGTCATCATGGACCTTACGACCAGGGCTAAACCCGTg                                     >  1:1864643/1‑149 (MQ=11)                   ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGAACGGCGTGGAACGCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  1:1918293/149‑1 (MQ=11)                   ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGAGGTACGGTCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACACCCAGGGCTAGAGACGTg                                     >  2:1785440/1‑149 (MQ=11)                     gggTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCt                                   <  1:1698027/149‑1 (MQ=32)                        ttAAGTCCCGCAACGAGCGCAACCCTTACCTTTGGTTGCCAGCCGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATCAACTCGAGGAAGGTGGGGATGACGTCCAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACa                                <  2:1720830/149‑1 (MQ=11)                             tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGCCCAGGGCTACACACGTGCGACAATGgc                           >  2:1708443/1‑149 (MQ=17)                               ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGCTAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTAGCCACGTGCTACAAGGgcgc                         >  2:1901670/1‑149 (MQ=255)                               ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgcgc                         >  2:1825359/1‑149 (MQ=32)                               ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgcgc                         >  2:1175481/1‑149 (MQ=32)                                cGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCa                        <  1:1748929/149‑1 (MQ=32)                                cGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGCGATACACCCGGGGTCCAAGGGCCCa                        >  2:985120/1‑149 (MQ=11)                                cGCAACGAGCGCAACCCCTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCa                        >  2:1808172/1‑149 (MQ=17)                                 gCACCGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCCTACGACCAGGGCTACACACGTGCTACAATGGCGCAt                       <  1:51876/149‑1 (MQ=17)                                   aaCGGGCGCAAGCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACGGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATAc                     <  1:585361/149‑1 (MQ=12)                                   aaCGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCCGGGCTACACACGTGCTACCATGGCGCAGAc                     >  1:653251/1‑149 (MQ=12)                                      gAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGAAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  >  2:340322/1‑149 (MQ=17)                                      gAGCGCAACCCTTATCTTTTGGTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTCCACTgggtgaagcagt                  <  2:515845/149‑11 (MQ=11)                                      gAGCGCAACCCTTAGCTTTGGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  <  2:897803/149‑1 (MQ=17)                                       gtcgcCACCCTTGTCTGTGGTGGCCCGCGGGCCGGCCGGGAACTTAAGAGCGGCTGCCTGTGAGTATCGTGAGGATTTCGGTCATCTCGGCAAGTCACCATGGCTCTTACGTCCAGGGCTACACACGTGCTACAATTGCGCAtgcgcag                 <  2:329287/147‑7 (MQ=2)                                           caaccctcgccccttgtggCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGaa             <  1:651484/136‑1 (MQ=1)                                           cAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGaa             <  2:1553353/149‑1 (MQ=32)                                            aaCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAg            >  1:307629/1‑149 (MQ=32)                                              cccTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCg          >  1:830499/1‑149 (MQ=32)                                               ccTTACCTTTGGGTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGa         <  1:258950/149‑1 (MQ=12)                                                 ttATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGAcc       >  1:1688556/1‑149 (MQ=32)                                                   aTCTTTTGTTGCCAGCGGTCCGGCCGGGAACGCAAAGGAGACTGCCCGTGAAAAACTGGAGGGAGGTGGGGCGGACGTCAGGGCATCACGGCGCGTACGGCCACGGGTCCCGACGTGCTACCACGGCGCCTACTCAgaggagggtcccc     >  2:152458/1‑142 (MQ=2)                                                    tCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTcg    <  1:340322/149‑1 (MQ=32)                                                     cTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTcgc   <  2:1924525/149‑1 (MQ=31)                                                     cTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTcgc   >  1:718489/1‑149 (MQ=31)                                                      ttttGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTcgcg  >  2:954824/1‑149 (MQ=11)                                                                                                                                         |                                                                  AGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  CP009273/221324‑221525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.