| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 223539 | 37 (0.530) | 9 (0.140) | 5/278 | 9.7 | 20.2% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCG > CP009273/223394‑223616 | gCACCGAAGCTGCGGCAGGGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGc < 2:1115461/149‑1 (MQ=37) aCCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg > 2:675582/1‑149 (MQ=38) aGCTTCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGCGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc < 1:955256/143‑1 (MQ=255) tctgcgtcgcagtcGCTTATGCGTTGTTGGGTAGGGGAGCGTCCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg < 1:384598/130‑1 (MQ=11) cTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAATGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg > 1:538103/1‑143 (MQ=37) cGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg > 1:93024/1‑143 (MQ=38) ggCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGCTATCAGAAGTGCGAATGCTGACATAAGTACCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg < 2:851337/149‑1 (MQ=255) aGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATAAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCCCGCCGGACGACCa > 1:281738/1‑143 (MQ=255) gACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGAGATAAGTAGCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt > 2:875530/1‑149 (MQ=255) gACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg < 1:149018/143‑1 (MQ=38) gCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATGAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAACAAGGGtt > 1:393009/1‑143 (MQ=255) tATGCGGTGTTGGGTAGGGGGGCGTTCTGGAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt < 1:704353/143‑1 (MQ=255) tGCGTTGTTGGGGAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACg > 2:578377/1‑149 (MQ=17) ttgGGTAGGGGAGCGTTCTGTAAGCCTGGGAAGGTGTACTGTGAGGTATGCTGGAGGTATCGGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt < 1:63275/143‑1 (MQ=21) tgcgTAGGGGAGCGTTCTTGAGGCCGGCGAGGGGGTACTGGGAGGTATGCTTGAGGTAGCAGAAGTGCGAATTCTGACAGAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGtt < 1:743225/140‑1 (MQ=11) ggTAGGGGAGCGTTTTGTTAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgggg < 2:1118685/149‑1 (MQ=21) gTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAAAGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAAt > 1:892618/1‑143 (MQ=21) gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGGAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg < 1:877722/143‑1 (MQ=25) gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATACGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAGCGTTAATCggggagggg > 2:173394/1‑144 (MQ=255) gggAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCGGCTCGACAGAGTAGGAAGTGTTCCTGTCCAACGTTAATCggg < 1:496470/143‑1 (MQ=11) gCGTTCTGGAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAg < 2:372696/149‑1 (MQ=25) cGTTCTGGAAGGCTGTGAAGGTGGACTGGGAGGTATGCTGGAAGTACCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGt < 2:29424/149‑1 (MQ=11) gTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAggg > 1:924291/1‑143 (MQ=35) gTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccg > 2:503870/1‑148 (MQ=25) aGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCACCGTTAATCGGGGCAGGGTGAGTCGACCCCTa > 2:462262/1‑149 (MQ=25) aGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa > 1:968081/1‑143 (MQ=35) gCCTGGGAAGGTGGACGGGGAGGTATGCTGGACGTATCAGAAGTGCGAATGGTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGGCGGAAGACCACGGGTTCCTGTCCAACGTTAATCAGGGCAGGGTGAGTCGAc < 1:435994/143‑1 (MQ=11) caGGTGGACGGTGAGGTATGCTGGGGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAg < 1:90686/142‑1 (MQ=255) atggggtAGTGTTAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAgg < 2:338259/144‑1 (MQ=255) gtgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCg > 1:752974/1‑143 (MQ=35) tgtACTGTGAGGTATGCTGGAGGTATCAGAAGGGCGAATGCTGGCATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGGTCCGGTCCACCGGTAATCGGGGGAGGGTGAGTCGCCCCCTAAGGCGa > 1:480876/1‑143 (MQ=11) tagtgtgAGGTATGCTGGGGGTATCAGGAGTGCGAACGCTGACATAAGTAACGATAAAGCGGGTGAACAGCCCGCTCGCCGGAAGACCAAGGGCTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCCACCCCTAAGGCGAgg < 1:919716/140‑1 (MQ=11) tACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGaaa < 2:102179/149‑1 (MQ=33) tgtgAGGTATGCTGGAGGTATCAGCAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGCCCAAGGGTTCCAGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCCAAGGCCAGGCCg > 1:349128/1‑143 (MQ=11) ggggAGGTATGCTGGAGTGAGCAGAAGTGCGAATGCTGACATAAGTAACGGTAAAGCGGGTGAAGAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc < 2:245988/146‑1 (MQ=11) gAGGTATGCTGGAGGTATCAGAAGTGCGAATGCCGACATAAGTAACGATACAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTCCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGaaa < 1:648522/143‑1 (MQ=12) tATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCg < 1:565628/143‑1 (MQ=11) | GCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCG > CP009273/223394‑223616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |