New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1222499 =	62 (0.900)	7 (0.110)	5/274	9.6	10.9%	intergenic (+75/+28)	ycgJ/pliG	uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
	?	CP009273	1222518 =	56 (0.860)					intergenic (+94/+9)	ycgJ/pliG	uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGGAAAAATCAATCAAACCACCACAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTT  >  CP009273/1222372‑1222654                                                                                                                                                   |                                                                                                                                         gttgAAACATCAATCAAACCCCCACAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGt                                                                                                                                        <  2:161919/146‑1 (MQ=255)      aaaaTCAATCAAACCACCACAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCgg                                                                                                                                         >  1:124313/1‑143 (MQ=255)      aaaaTCAATCAAACCACCACAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACa                                                                                                                                   <  2:659343/149‑1 (MQ=255)        aatcaatcAAACCACCACAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACagt                                                                                                                                 >  2:376124/1‑147 (MQ=255)             atcaaACCACCACAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCGCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACAt                                                                                                                                  <  1:367678/143‑1 (MQ=255)                 aaCCATCACAAAGATGTTATTTAGGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTAc                                                                                                                              <  1:243420/143‑1 (MQ=255)                  accaccACAAATAAGTGATTGATGTGTCGTGAGTGGTGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAAttt                                                                                                                       <  2:1033694/149‑1 (MQ=255)                    caccacAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTa                                                                                                                           <  1:606007/143‑1 (MQ=255)                          aaaGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGa                                                                                                                     <  1:1002823/143‑1 (MQ=255)                          aaaGATGTTATTTATGTGTCGGGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCg                                                                                                               <  2:291058/149‑1 (MQ=255)                            aGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGAc                                                                                                             <  2:786279/149‑1 (MQ=255)                              aTGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGt                                                                                                           <  2:435462/149‑1 (MQ=255)                                 ttatttatGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGGGGGTCCCCGACGGTGGACATTGACGTAATTTGGATATCGACgggat                                                                                                        >  2:104021/1‑145 (MQ=255)                                     ttatGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGtt                                                                                                          <  1:463485/143‑1 (MQ=255)                                       atGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATAttttt                                                                                                  <  2:728049/149‑1 (MQ=255)                                       atGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAACTTGAATATCGACACTATAttttt                                                                                                  >  2:371672/1‑149 (MQ=255)                                               tgagtgaTGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTa                                                                                                >  1:184301/1‑143 (MQ=255)                                                 agttaTGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAgttttgtt                                                                                        <  2:79078/149‑1 (MQ=255)                                                        tCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTAGATTTTTTAGTTTTGTTTTTACgg                                                                                 >  2:982819/1‑149 (MQ=255)                                                          ttGTTTACATTATGTTCTATTCGTCATTAACCGCGTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGc                                                                               <  2:908756/149‑1 (MQ=255)                                                            gTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTCTATTTTTTAGTTTTGTTTTTAc                                                                                   >  1:639075/1‑143 (MQ=255)                                                              ttgctttcggTTCGATTCGTCATTCACCTTTCGAGCGACAGAGAGGAGTTGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACCTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACgg                                                                                 <  1:557919/134‑1 (MQ=255)                                                                  aTTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTGATGACGGGAAGAGTCCCCGTCGGTTGACATTTACTTAATTTGCATATCGCCGTTATATTTTTTCGTTTTGTTTTTACGGGCGTCGTTTc                                                                       >  2:499540/1‑149 (MQ=255)                                                                     aTGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGcgtcgt                                                                          <  1:190754/143‑1 (MQ=255)                                                                        ttCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTc                                                                       <  1:1004228/143‑1 (MQ=255)                                                                        ttCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGCGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATATGAATATCGACGTTATATTTATTAGTTTGGTTTTTACGGGCGTCGTTTc                                                                       >  1:194954/1‑143 (MQ=255)                                                                          cTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTCACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCgg                                                                     <  1:799743/143‑1 (MQ=255)                                                                               cGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAacac                                                          >  2:896497/1‑149 (MQ=255)                                                                                 tCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCa                                                              <  1:239950/143‑1 (MQ=255)                                                                                   aTTAACCTCTTGAGCGACAGGGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAac                                                            <  1:65466/143‑1 (MQ=255)                                                                                    ttAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTGGCAACACTCGCa                                                     >  2:210823/1‑149 (MQ=255)                                                                                     tAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAaccc                                                          >  1:320088/1‑141 (MQ=255)                                                                                       aCCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATAACGGGGAGAGTCCCCGTCGGTTGGCATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTATTGTTTTTACGGGCGCCGGTTCGGGCTGGGAACACTc                                                        >  1:127766/1‑143 (MQ=255)                                                                                          tctTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCat                                               >  2:494970/1‑149 (MQ=255)                                                                                           ctTGCGCGACAGGGGGGAGTGGGGCTTTAACGTTTGTGACGGGGGGAGTCCCCGTCGGTTGGCTTTTTTTTTATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAg                                                    <  1:356516/143‑1 (MQ=255)                                                                                                 cGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCata                                              >  1:886013/1‑143 (MQ=255)                                                                                                  gACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTACATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCatct                                             >  1:806026/1‑141 (MQ=255)                                                                                                    cAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTCTATTTTTTAGTTGTGTTTTTTGGGGCGTCGTTTCGGGGTTGCAACACTCGCAGATCATAttt                                           >  1:926837/1‑143 (MQ=255)                                                                                                    cAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGCTCTGCAACGCTCGCAGCTCATGATTGCCAGa                                     >  2:972473/1‑149 (MQ=255)                                                                                                      gggaggagTGGGGCATTAACGTTTATGACGGGGAGTGTCCCCGTCGGTTGACATTTTCTTAATTTGAATTTCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGc                                         <  1:190271/141‑1 (MQ=255)                                                                                                      gagagGAGTGGGGCATTAACGTTTATGACGAGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATCTCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTTCCAGAAg                                   >  2:624034/1‑149 (MQ=255)                                                                                                       caaggagTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACCTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGcc                                        <  1:827293/141‑1 (MQ=255)                                                                                                        gaggagTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCa                                       <  1:394418/143‑1 (MQ=255)                                                                                                         aggagTGGGCTATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTAATATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTCGTTTTTACGGGCGTCGTTTCGGGCTTGCAACACTCGCAGCTCATATTTGCCAg                                      <  1:590771/143‑1 (MQ=255)                                                                                                                gggCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACCCTCGCAGCTCATATTTGCCGGAAGCAGGgagtga                         >  2:284455/1‑149 (MQ=255)                                                                                                                   cATTAACGTTTATGACGGGGCGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTa                      <  2:201822/149‑1 (MQ=255)                                                                                                                   cATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTa                      <  2:944954/149‑1 (MQ=255)                                                                                                                       aaCGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGt                  >  2:362198/1‑149 (MQ=255)                                                                                                                        aCGTTTATGACGGGGAGAGTCCCCGGCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTc                 <  2:971265/149‑1 (MQ=255)                                                                                                                         cGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTcc                <  2:959548/149‑1 (MQ=255)                                                                                                                             tATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATACTTGCCAGAGCCAGGGAGTGAGTACTgc                  <  1:908771/143‑2 (MQ=255)                                                                                                                               tGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATATGCCAGAAGCCGGGAGTGAGTATTGTcc                >  1:1068376/1‑143 (MQ=255)                                                                                                                                gACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGACGCAGAGAGTGAGGATTGGcct               >  1:1000644/1‑142 (MQ=255)                                                                                                                                    gggAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCCACACTCGCCGCTCATATTTGCCAAAAGCAGGGAGTGCGTCGAGTCCGTTAc           >  1:1024179/1‑143 (MQ=255)                                                                                                                                    gggAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGTGTGAGTATTGTCCGTGACTATCGa     <  2:881679/149‑1 (MQ=255)                                                                                                                                     ggAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCCGCTCATATTTGCCAGAAGCAGGGAGGGAGTATTGTCCggcact          >  1:691230/1‑138 (MQ=255)                                                                                                                                             cccGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTATTTTTTTTTTTACGGGCGTCGTTTCGAGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGCGTGAGTATTGTCCGTGACTATCGAGtt  >  1:335554/1‑143 (MQ=255)                                                                                                                                                   |                                                                                                                                         GTGGAAAAATCAATCAAACCACCACAAAGATGTTATTTATGTGTCGTGAGTGATGTCTTGTTTACATTATGTTCTATTCGTCATTAACCTCTTGAGCGACAGAGAGGAGTGGGGCATTAACGTTTATGACGGGGAGAGTCCCCGTCGGTTGACATTTACTTAATTTGAATATCGACGTTATATTTTTTAGTTTTGTTTTTACGGGCGTCGTTTCGGGTTTGCAACACTCGCAGCTCATATTTGCCAGAAGCAGGGAGTGAGTATTGTCCGTGACTATCGAGTT  >  CP009273/1222372‑1222654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.