New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3938338	NA (NA)	9 (0.140)	6/278	9.1	19.0%	noncoding (1275/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
	?	CP009273	= 4032171	40 (0.580)					noncoding (1293/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA  >  CP009273/4032027‑4032236                                                                                                                                                  |                                                                  gCACCGAAGCTGCAGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTAACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGcc                                                               >  2:839157/1‑149 (MQ=255)    ccGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACAGAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                                                            >  2:192688/1‑149 (MQ=255)     cttcggtGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCAGGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCg                                                                 >  1:650755/7‑143 (MQ=255)     cGAGGCGGCGGCAGCGACACGATGGGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgcccg                                                                 >  1:955389/1‑143 (MQ=14)      gAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAAAAGCCCGCTCGCCGGAAg                                                          >  2:1046665/1‑149 (MQ=255)           tGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                                     <  2:647821/149‑1 (MQ=255)             cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                                   >  2:1149284/1‑149 (MQ=255)             cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                                   <  2:96840/149‑1 (MQ=40)             cGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGGGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGAAATAAGTAACGATAAAGCGGGTGAAAAGCCGGATAGGCGGAAGa                                                         >  1:170326/1‑143 (MQ=14)              ggCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAgcc                                                        >  1:44800/1‑141 (MQ=255)              ggCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAggg                                                  <  2:1070708/149‑1 (MQ=255)                cggCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAAGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGtt                                                >  2:813148/3‑149 (MQ=255)                cAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAAGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGtt                                                >  2:813419/1‑149 (MQ=255)                    gACCCTATGTGGTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAcctgggg                                                  <  1:665843/143‑6 (MQ=255)                    gACACAAGGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAggg                                                  >  1:453482/1‑143 (MQ=25)                     acacTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt                                           >  2:950117/1‑149 (MQ=38)                      cacTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc                                          >  2:1144709/1‑149 (MQ=37)                      cacTATGTGTGGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGtt                                                <  1:769967/143‑1 (MQ=37)                       acTATGTGTTGTTGGGTAGGGGAGCGTTCTGTGAGCATGTGGCGGTGTGCTGGTAGACATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                               <  1:491021/143‑1 (MQ=11)                       acTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                               >  1:159381/1‑143 (MQ=37)                       acTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGCAT‑CAGAAGTGCGAATGCTGACACAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTc                                               <  1:695963/143‑1 (MQ=25)                       acTATGTGTTGTTGAGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGAGAAAAGACCGCTCGCCGGAAGACCAAGGGTTc                                               >  1:1039769/1‑143 (MQ=255)                        cTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGCAGACCAAGGGTTCCTGTCCa                                        >  2:270221/1‑149 (MQ=37)                                tgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGGAGGTGTGCTGTGAGGCATGCTGGAGGTGT‑CAGAAGTGCGAGTGCTGACATAAGTTACGGTAAAGCGGGGGAAAAGCCCGCTCGCCGGAAGACGAAGGGTTGCTGTCGAAc                                      >  1:401616/1‑143 (MQ=11)                                tgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCGCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                                      >  1:162671/1‑143 (MQ=17)                                  ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGAAATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGGTCCTGTCCacggt                                    >  1:1087997/1‑139 (MQ=12)                                       tAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCa                         <  2:876992/149‑1 (MQ=32)                                        aGGGGAGCGTTCTGGAAGGCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg                              <  1:256643/143‑1 (MQ=17)                                         ggggAGCGTTCTGGAAGCCTGTGAAGGTGTGCTGGGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                       <  2:532832/149‑1 (MQ=17)                                             aGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGTAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa                   <  2:94207/149‑1 (MQ=17)                                               cGTTCTGTATGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg                       <  1:699155/143‑1 (MQ=17)                                                gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAGTGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCATGTCCAAGGTTAATCGGGGCAggg                      >  1:402358/1‑143 (MQ=12)                                                 ttgtGTAAGCCGGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt                     <  1:485704/140‑1 (MQ=17)                                                 atCTGTAAGCCGGTGAAGGGGTGCTGTGAGCCAGGCCGGAGGGAT‑CAGAAGTGCGCATGCTGACATAAGTAACGACAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTCAATCGGGGCAGGGt                     <  1:952952/142‑1 (MQ=11)                                                  tccgcaaGCCTGTGAAGGTGGGCTGTGAGGCAGACTGGAGGTAT‑GAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCACGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTg                    <  1:25554/138‑1 (MQ=11)                                                        aGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa              >  1:479429/1‑143 (MQ=32)                                                        aGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGa              >  1:1067196/1‑143 (MQ=32)                                                        aGCCTGTGAAGGTGTGCTGTGAAGCATGCTGGAGGTATACACAA‑TGCGAATGATGAAGAGGGGAACCATAAAGCTGGAGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTAGa              >  1:1044352/1‑143 (MQ=11)                                                              tgAAGGTGTGCTGTTAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa  <  2:385854/149‑1 (MQ=11)                                                              cgacggcgtccTGTGAGGCATTCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCCCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa  <  2:984428/139‑1 (MQ=1)                                                                                                                                                  |                                                                  GCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAT‑CAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGA  >  CP009273/4032027‑4032236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.