| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 3,370,282 | C→T | W166* (TGG→TGA) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,370,282 | 0 | C | T | 98.6% | 226.2 / NA | 71 | W166* (TGG→TGA) | sspA | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (29/40); minor base G (1/0); total (31/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370136‑3370423 | aCAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTca < 2:934596/149‑1 (MQ=255)aCAGACTAACTCCGGCCCAGACGCATTGCACGTTCTGCTACAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTca < 2:306790/149‑1 (MQ=255) cAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTcac > 2:107961/1‑149 (MQ=255) aCTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAGAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTcaca > 1:112189/1‑143 (MQ=255) tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGACGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCCCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 2:125490/149‑1 (MQ=255) tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGCACTCGATTCCCCGTTGCGGCAGACGTCACAGCCGCG‑Ga > 2:881436/1‑149 (MQ=255) tCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 2:100188/149‑1 (MQ=255) ccAGCCGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 1:614591/143‑1 (MQ=255) ccAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAGCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑Ga < 1:557016/143‑1 (MQ=255) ccAGACGCATTTCACGTTCTGCTACAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGa > 2:776404/1‑149 (MQ=255) aGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGCGTCACGCTGAGAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATa < 2:227441/149‑1 (MQ=255) aGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCCGACGTCACAGCAGCG‑GAGc > 1:1026631/1‑143 (MQ=255) gACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAg > 2:979917/1‑149 (MQ=255) tttCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCg > 2:134037/1‑149 (MQ=255) tCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCACAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCa > 1:534313/1‑143 (MQ=255) aCGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCa > 2:319983/1‑149 (MQ=255) cGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATc < 1:400977/143‑1 (MQ=255) gTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCAGCGCAGGG‑GAGCAAGATAGCAATCGACCCgg > 2:388676/1‑149 (MQ=255) gTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAgg < 2:137641/149‑1 (MQ=255) cTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCCGGTGGCTATACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTg > 2:287455/1‑149 (MQ=255) gcctCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCAACCAGGCTGaa < 2:1052739/146‑1 (MQ=255) gCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCGCAAAGACGCGGGTCAGATAGCCTTGCAGCTCTGTCGCACCCGGGCCGCTGAACTCGATGCCCAGGTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGaa < 2:540933/149‑1 (MQ=255) ttCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCCGCTCTTTCGCGCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACt > 2:984882/1‑149 (MQ=255) cAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATAAAAGCAAACGCCGCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCa < 2:34312/149‑1 (MQ=255) gTTAAAAAAGCAAGGAAAGAGTCACGCTCAAAGACCCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATc < 2:563049/149‑1 (MQ=255) aagaagCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCa < 1:377140/143‑1 (MQ=255) aagCAAGGACAGAGTCACGCGCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAgg < 2:741777/149‑1 (MQ=255) aagCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGTTAGCAATCGACCAGGCTGAACTCATCg < 1:279845/143‑1 (MQ=255) gCAAGGAAAGAGTCACGCTCAAAGACGCGGGGCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCGAGATAGCAATCGACCAGGCTGAACTCGTCGcc > 1:459500/1‑142 (MQ=255) cGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAcc < 2:495905/149‑1 (MQ=255) cGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTGTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAcc < 2:40131/149‑1 (MQ=255) gCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTc < 1:764985/143‑1 (MQ=255) cAAAGACGCGGGTCATATAGCCTTTCCGCTCTTTCGCACCCGGGCCGCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGa < 1:958914/143‑1 (MQ=255) aaaGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAc > 1:193368/1‑143 (MQ=255) aGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGGTGGCATTCGACCAGGCTGACCTCATCGCCCAGGAAGTACGGCTTCTAACCGAAAAcc > 2:977487/1‑149 (MQ=255) aGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCg < 1:1035468/143‑1 (MQ=255) aCGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCgg > 2:711226/1‑149 (MQ=255) cgcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgc < 2:289919/149‑1 (MQ=255) gcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg < 2:992369/149‑1 (MQ=255) gcgGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCGTCTGACCGAAGa > 1:839372/1‑143 (MQ=255) gggTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGGCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGCACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCa > 2:652089/1‑149 (MQ=255) ggTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCCGTGGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCaa > 2:233212/1‑149 (MQ=255) cATATACCCTTTCAGCTCTTCCGCACCCCGGCCGCTGAACTCGATGCCCAGTAGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg < 1:121911/143‑1 (MQ=255) atatAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGGAGACCGGCCCAATCGc > 2:331769/1‑149 (MQ=255) ctcgCCTTCCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTATGACCGAAGACCGGCGCAATCGCca < 2:595985/146‑1 (MQ=255) ataGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATGGCAATCGACCAGGCTGAACCCATCGCTCAGGAAGGACGGCTTCTGACCGAAGGCCGGCGCAGACGCca > 2:36786/1‑149 (MQ=255) taGCCTTTCAGCTCGTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGCCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcag < 2:776758/149‑1 (MQ=255) ccTTTCAGCTCTTTCGCACCCGGGCCGCTCAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGATCGAAGACCGGCGCAATCGCcagcag > 2:723354/1‑149 (MQ=255) ccTTTCACCTCTTTCGCCCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGc < 1:540557/143‑1 (MQ=255) tttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGtt < 2:933151/149‑1 (MQ=255) tttCAGCTCTTTCGCACCCGGGCCGCTGAACCCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCca < 1:344110/143‑1 (MQ=255) tttCAGCTCTTTCCCACCCGGGCCGCTGAACTCGATGCCAAGTTGCGGAAGACGCTACAGCAATG‑GATCAAGGTAGCAATCGACCAGGCTGAACTCATCGACCAGGAAGTACGGCTCCTGACCGAAGCCCGGCGCCATCGCca > 1:656138/1‑143 (MQ=255) ttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttc < 2:355814/149‑1 (MQ=255) gCACCCGGGCCGCTGACCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTg < 2:783207/149‑1 (MQ=255) cACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGGTCTTCgcgc > 1:435381/1‑143 (MQ=255) ccccGGGCCGCTGAACGCGACGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCa < 1:498395/142‑1 (MQ=255) ggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGc < 1:351880/143‑1 (MQ=255) cTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCGGCAGTTCTTCGCGCAGTTGCTTCCg > 1:596199/1‑143 (MQ=255) cTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTGGCGCGGTTGGTTACg > 1:430287/1‑143 (MQ=255) cTGAACTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACg > 1:865950/1‑143 (MQ=255) ggAACGCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCa < 2:1012618/148‑1 (MQ=255) gctctctctGCTCAGTTGCTGCAGACGTCACAGCAGCG‑GAGCAAGACAGCAATCGACCAGGCGGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCAt < 2:269232/141‑1 (MQ=255) aCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCg < 1:922229/143‑1 (MQ=255) aCTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTGCTTCGCGCAGTTGCTtacgtacg > 1:393670/1‑143 (MQ=255) cTCGATGCCCAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCgg < 1:836609/143‑1 (MQ=255) tCGATGCCCAGTTGAGGCAGACGTCAC‑GAAGTGCCAACTATATAGCAATAGACCAGGCTGAACTCATCGCTCAGGGAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGc > 2:872954/1‑149 (MQ=255) cccAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGa < 2:530732/149‑1 (MQ=255) cAGTTGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGTAGTTGCTTACGTGCGGCATCTGCTTCAGAAg > 2:47855/1‑149 (MQ=255) ttGCGGCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAg > 1:653547/1‑143 (MQ=255) gCAGACGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCg < 2:123598/149‑1 (MQ=255) cAGGCGTCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGACCTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTg < 1:58607/143‑1 (MQ=255) | ACAGATTAACTCCGGCCCAGACGCATTTCACGTTCTGCTTCAGTTAAAGAAGCAAGGAAAGAGTCACGCTCAAAGACGCGGGTCATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCG‑GAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCTGCTTCAGAAGCTGAACCG > CP009273/3370136‑3370423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |