New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4161373	8 (0.070)	13 (0.120)	6/284	15.1	62.4%	noncoding (2805/2904 nt)	rrlB	23S ribosomal RNA of rrnB operon
	?	CP009273	= 4202760	NA (NA)					noncoding (2790/2904 nt)	rrlE	23S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.

GGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGA  >  CP009273/4161236‑4161500                                                                                                                                          |                                                                                                                                ggcgTGGACCCATCACGCGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCCAACGTACCCTTTAAGGGTCCTGaa                                                                                                                            <  2:389586/140‑1 (MQ=1)   agcggACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGtt                                                                                                                    <  1:1895053/146‑1 (MQ=1)      tgaagCATCACTTGTGTTCGGGGTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGaa                                                                                                                 <  1:398081/145‑1 (MQ=0)           ccgcagtGGGGTTCGGGTTGCCGTGCCAATGGCACGGCCCGGGAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAATCTTTCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGa                                                                                                                  <  2:422053/137‑1 (MQ=1)            atgaCTGCTGTTCCGGCTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGaa                                                                                                                 <  2:1425469/140‑1 (MQ=0)                                 ccgcgaaTGGTACTGCCAGGTGGCTATATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGgtgtg                                                                                      <  1:1286684/144‑1 (MQ=1)                                                      aggtAAGTGGGGAAGGGATATGCGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCGTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAg                                                                 <  1:660050/146‑1 (MQ=1)                                                                                                                     tcgcccTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACCACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGTTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATga  <  1:654158/146‑1 (MQ=0)                                                                                                                                          |                                                                                                                                GGAGTGGACGCATCACTGGTGTTCGGGTTGTCATGCCAATGGCACTGCCCGGTAGCTAAATGCGGAAGAGATAAGTGCTGAAAGCATCTAAGCACGAAACTTGCCCCGAGATGAGTTCTCCCTGACCCTTTAAGGGTCCTGAAGGAACGTTGAAGACGACGACGTTGATAGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGA  >  CP009273/4161236‑4161500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.