| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 1,683,547 | G→T | V239L (GTG→TTG) | manA → | mannose‑6‑phosphate isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,683,547 | 0 | G | T | 97.5% | 250.4 / NA | 80 | V239L (GTG→TTG) | manA | mannose‑6‑phosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base T (36/41); total (39/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAGGGTGAAGAAAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGGTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTGATATTCCGGAAC > CP009273/1683402‑1683691 | gCAGGGTGAAGAAAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGACGACAGCGGGCTGTTCTCCCCGCTATTGCTGAATGTGGTGa > 1:1296715/1‑149 (MQ=255) cAGGGTGAAGAAAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGaa < 1:1892372/149‑1 (MQ=255) gggTGAAGAAAAATCCCGCGCGCTGGCGCTTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAAt > 1:1425820/1‑149 (MQ=255) tGAAGCAAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGGTCTCCCCGCTATGGCTGAAGGTGGTGAACTTGa > 1:115353/1‑149 (MQ=255) tGAAGAAAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGa < 2:168460/143‑1 (MQ=255) tGAAGAAAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGGGTTGAAATTGa > 1:1625969/1‑149 (MQ=255) agaaAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTCTTGCTGAATGTGTTGAAATTGAAcc > 1:1507067/1‑149 (MQ=255) agaaAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAAt > 2:1385000/1‑143 (MQ=255) gaaAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCTCTATTGCTGAATGTGTTGAAGtt > 2:1107545/1‑143 (MQ=255) gaaAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATGTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTGGAAAtt > 2:739855/1‑143 (MQ=255) naacactccGCGCGCTGGCGCTTTTAAAATNGGCCTTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGAAAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAAGTg < 2:1627761/136‑1 (MQ=255) taaaTCCCGCGGGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGa < 2:1224134/142‑1 (MQ=255) aaaaTCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGa < 2:1556331/143‑1 (MQ=255) aattCCCGCGTGCTGTCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAATCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGaa < 2:299393/140‑1 (MQ=255) aaTCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAAc < 2:621080/143‑1 (MQ=255) ccGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTg < 2:1182490/143‑1 (MQ=255) gcTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGt < 1:39031/149‑1 (MQ=255) tGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑Tc < 1:764514/149‑1 (MQ=255) aTTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTGTTGCTGGATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGt‑t > 1:339537/1‑149 (MQ=255) ttttAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑Tc < 2:598702/143‑1 (MQ=255) ttttAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑Tc > 1:853689/1‑149 (MQ=255) aaaaTCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGGGATGT‑TCCTGt > 2:555624/1‑143 (MQ=255) aaTCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGaa > 1:338368/1‑149 (MQ=255) aTCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTGTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACACTGGCGAAGCGATCT‑TGCTGT‑TCg > 2:1700015/1‑143 (MQ=255) ggCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAacac < 1:229158/149‑1 (MQ=255) cccTCGATAGGCAGCAGGGTGAACCGTGGCAAACGAGTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGGCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGaa < 2:668896/143‑1 (MQ=255) ccTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGc > 1:739880/1‑149 (MQ=255) gATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTCAACGTTTTGAATTTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGc < 1:1489126/149‑1 (MQ=255) ccAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTAcc > 1:577182/1‑149 (MQ=255) gggTTAACCGTGGCAAACGACTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAAAGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAg < 1:670659/149‑1 (MQ=255) ggTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAgg > 1:707433/1‑149 (MQ=255) ggTGAACCGTGGCAAACGATTCGTTTAATTTCTAAATTTTACGCGAAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCt < 2:1046584/143‑1 (MQ=255) aCCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTgg < 1:213706/149‑1 (MQ=255) cGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGgcg < 1:487508/149‑1 (MQ=255) cGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGGTTTGAAATTTAACCTTGGCGACG‑GTGGTGTCCGGT‑TTGCTGCAAAGCCGCGAGCTGACCCTCAAGGCGTGgcg > 1:911753/1‑149 (MQ=255) cGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGGCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACCCCGCACGCTTACCTGCAAGGCGTGgcg > 1:1693235/1‑149 (MQ=255) tGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCt < 1:492335/149‑1 (MQ=255) gCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTgg > 2:890770/1‑143 (MQ=255) gCAAACGATTCGTTTAATTTCTGAACTTTACCCGGAAGACCGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTgg < 2:1666165/143‑1 (MQ=255) cAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGCGgc > 2:1541273/1‑143 (MQ=255) aaaCGATTCGTTCAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGaa < 1:1506857/149‑1 (MQ=255) aaaCGATGCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCTCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGaa < 1:1211526/149‑1 (MQ=255) aaCGATTCTCTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAATTTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCATGCTTACCTGCAAGGCGTGGCGCTGGAAg < 1:1426373/149‑1 (MQ=255) aCGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTTT‑TCGCTGTAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGt > 1:1095571/1‑149 (MQ=255) gATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGa < 1:1680735/149‑1 (MQ=255) ttCGTTTAATTTTTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATg < 1:1495951/149‑1 (MQ=255) ttCGTTTAATTTCTTAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGaa < 2:1132937/143‑1 (MQ=255) ttCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATg > 1:1578393/1‑149 (MQ=255) gtCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGaa < 2:198165/142‑1 (MQ=255) gTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTg > 2:854734/1‑143 (MQ=255) ttAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGAt < 2:577664/143‑1 (MQ=255) aTTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCCCACGCTTNCCTGCAAGGCGTGGCGCTGGAAGCGATGGc > 2:1263345/1‑143 (MQ=255) tttCTGAATCTTACCCGGAAGACTGCGGTCTGTTTTCCCCGCTACTGCTGAATGTTTTGAAATTGAACCCTGGCGAAGCGATGT‑GCCTGT‑TCGCTTAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTcc < 1:1676130/149‑1 (MQ=255) ttCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCg > 1:361186/1‑149 (MQ=255) tGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGaaa > 1:164198/1‑147 (MQ=255) tGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATa > 1:615803/1‑149 (MQ=255) gAATTTTACCCGGACGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTc < 2:899484/143‑1 (MQ=255) aTTTTACCCGCAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGACCCCTGGCGACGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTcaa < 2:465447/143‑3 (MQ=255) accggctcacgtctgTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGtgctgc < 1:1379392/135‑1 (MQ=255) ccGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCtgcg > 1:489250/1‑149 (MQ=255) gAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCtgcgtgc > 1:1712304/1‑149 (MQ=255) gACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCtgcg > 2:1519190/1‑143 (MQ=255) aGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGGAAACGCCGATAACGTGCTGCGTGCGGGTCt < 1:1886253/149‑1 (MQ=255) cGGTCTGTGCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGCTGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCgg < 2:265326/143‑1 (MQ=255) gTCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCGAGGCGTGGCGCTGGAAGTGAGGGCAAACTCCGATAACGTGCTGCGTGCGGGt > 2:1147902/1‑143 (MQ=255) tCTGTTCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGc < 1:1550038/149‑1 (MQ=255) tCTGTCCTCCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGc < 1:1536173/149‑1 (MQ=255) cTGGTCTCCCCGCTATTGCGGAATGGGTTGAAATTGAACCCTGGCGACGAGCTGT‑TCCTGT‑TCGCTGAAACGCCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCt < 2:1505909/143‑1 (MQ=255) tctcCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTaaa < 1:279492/149‑1 (MQ=255) cctcCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTTCGTGCGGGTCTGACGCCTaaa < 1:954114/148‑1 (MQ=255) tcCCCGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGcc < 2:526761/143‑1 (MQ=255) ccGCTATTGCTGAATGTGCTGAAATTGAACCCTGGCGAAGC‑ATTT‑GCTGGTCTCGTGGAAAACCCCCATTCCTGCCTGCAAGGCGTGGCGCTGGAAGTGATGGCCAACTCCGATAACGTGCTGCGTCCCGGTCTGACGCCGAAATACag > 1:1399303/1‑148 (MQ=255) cGCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGTGTGGCGCTGGAAGTGCTGGCATACTCCGATAACGTGCTGCGTGCGGGGCTGACGCCTAAATACAtt < 1:1399966/149‑1 (MQ=255) gCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGCTAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTg > 1:561059/1‑149 (MQ=255) gCTATTGCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAAt > 2:1353950/1‑143 (MQ=255) gCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTGATATTc > 1:722129/1‑149 (MQ=255) gCTGAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTGATATTc > 1:90082/1‑149 (MQ=255) gAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTGata > 2:1149982/1‑143 (MQ=255) gAATGTGTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTGaga > 2:1378426/1‑141 (MQ=255) tgtgTTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGGTGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTGATATTCCGGAAc > 1:1476484/1‑149 (MQ=255) | GCAGGGTGAAGAAAAATCCCGCGCGCTGGCGATTTTAAAATCGGCCCTCGATAGCCAGCAGGGTGAACCGTGGCAAACGATTCGTTTAATTTCTGAATTTTACCCGGAAGACAGCGGTCTGTTCTCCCCGCTATTGCTGAATGTGGTGAAATTGAACCCTGGCGAAGCGATGT‑TCCTGT‑TCGCTGAAACACCGCACGCTTACCTGCAAGGCGTGGCGCTGGAAGTGATGGCAAACTCCGATAACGTGCTGCGTGCGGGTCTGACGCCTAAATACATTGATATTCCGGAAC > CP009273/1683402‑1683691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |