New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	94 (1.600)	69/296	0.0	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCC  >  CP009273/360141‑360428                                                                                                                                                  |                                                                                                                                               cccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg                                                                                                                                             >  2:753972/1‑149 (MQ=37)  ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg                                                                                                                                             >  1:204652/1‑148 (MQ=37)  ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg                                                                                                                                             <  2:204652/148‑1 (MQ=37)  ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg                                                                                                                                             <  2:204670/148‑1 (MQ=37)             ttGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACGGAGCCTTTCGTTTTATTTGCTGCCTGgggaatggggacgtgagtcttg                                                                                                                                 >  2:736027/1‑138 (MQ=11)             ttGCCTCGCAACGTTCAAATCCGCCCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTg                                                                                                                                 <  1:479163/149‑1 (MQ=255)               gcctCGAAACGTTCAAACCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGaa                                                                                                                               <  1:28813/146‑1 (MQ=255)                 ttCGCAACGTTCAAATCCGCTCCCGGCGGACTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTGTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGa                                                                                                                             <  1:149413/149‑1 (MQ=255)                      aatgTTCACACCCGCTCCCGGCGGATTTGCCCTACTCAGGAGAGCGTTCCCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa                                                                                                                        <  1:348167/146‑1 (MQ=17)                         gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgg                                                                                                                                              <  2:6888/124‑1 (MQ=37)                         gTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgg                                                                                                                                              >  1:6888/1‑124 (MQ=37)                              aaTCCGCTCCCGTCGTACTTGTCCTACCCAGGAGAGCGTTCACCGGTAAACACCAGATAAAACGTAATGCCCACTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCg                                                                                                                <  2:829500/149‑1 (MQ=18)                               aTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCATTCTTTCGACTGAGCCTTTCGCCTCACCCACCTGGTGGGGCATTGGGGATTAGTTCTTGAAGACGAAAGGGCCTCGt                                                                                                               >  1:934625/1‑149 (MQ=11)                               aTCCGCTCCCGGCGGATGTGTCATACTCAGGAGAGCGTTCACCGACAAACAACAGTTAAAACGAGAGGCCCAGTGTTTCGACTGAGTCTTTCGTTTTATTTGATGCCTGTGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGt                                                                                                               <  2:652880/149‑1 (MQ=18)                               aTCCGCCCCCGGCAGATTTTCCCTACCCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGt                                                                                                               <  1:371708/149‑1 (MQ=18)                                  cGCTCCCGGCGGCTTTGTCCTACTCAGGCGACTGTAGTTGGCCAAACAACAGATAAAACGAAAGGCCAAGTCTTTGGACTGAGCCTGTCGTTCTATTTGCTGCCTGGGGAATTGGGATTTAAGTGTTGAAGACGAGAGGGCCTCGCGAt                                                                                                            >  2:442620/1‑149 (MQ=12)                                     tCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACg                                                                                                         <  1:753972/149‑1 (MQ=255)                                             gATTTGTCCGACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAtttt                                                                                                 <  2:457390/149‑1 (MQ=255)                                              aTTTGTCCTACTCAGAAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAttttt                                                                                                <  1:745478/149‑1 (MQ=255)                                                  gTCCTACTCAGGAGAGCGTTCACCGACAAACAAGAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAg                                                                                            >  1:614093/1‑149 (MQ=255)                                                  gTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCCACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGGGATACGCCTATTTTTATAg                                                                                            >  1:555993/1‑149 (MQ=255)                                                   tCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAgg                                                                                           <  1:834314/149‑1 (MQ=255)                                                     cTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTACTCCTTAATGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGtt                                                                                         >  1:498191/1‑149 (MQ=255)                                                             gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTCTATAGGTGAACGTCAt                                                                                 >  2:880339/1‑149 (MQ=255)                                                              agagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATg                                                                                <  1:905834/149‑1 (MQ=255)                                                                    ctCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGa                                                                          <  2:311981/148‑1 (MQ=255)                                                                     tCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGGTGCGCCTATTTTTATAGGTTGATGTGATgggctggt                                                                         >  2:31190/1‑144 (MQ=25)                                                                        ccGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCa                                                                      >  1:207627/1‑149 (MQ=255)                                                                        ccGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTGTTATTTGATGCCAGGGGAATTGCGAATTAATTCTTGAAGACGAAAGGGCCTCGTCATACGCCTATTTTTATAGGTTAATGTCCAGGGAAGATccg                                                                      >  2:178764/1‑148 (MQ=25)                                                                         cGACAAACAACATATTAAACGAAAGGCCCAGTTTTTCGACTGAGTCTTTCGTTTTTTTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAg                                                                     <  1:400/149‑1 (MQ=255)                                                                         cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGGATTGGGAATTAATTCTTGAAGACGAAAGCGCCTCGTGATGCGCCTATTTTTATAGGTTAATGTAATGCGCAGAACCAg                                                                     >  1:286180/1‑149 (MQ=25)                                                                         cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAg                                                                     >  1:241653/1‑149 (MQ=255)                                                                           acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGcc                                                                   >  1:234929/1‑149 (MQ=255)                                                                              aacaacAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCGATTCTGACAGGGTCATGTCATGGGAAGAACCACCCggc                                                                >  2:326910/1‑147 (MQ=25)                                                                               acaacaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTCTAGGTTAATGTCATGGGAAGATCCAGCCGAcc                                                               >  2:102396/1‑149 (MQ=255)                                                                                   caGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGc                                                           <  2:817960/149‑1 (MQ=255)                                                                                    aGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCt                                                          <  1:714270/149‑1 (MQ=255)                                                                                         aaaCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGAAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCCGGCTTTccc                                                     >  2:678490/1‑148 (MQ=255)                                                                                                  gCCTAGTCTTTCGACTGTGCCTTTGGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGt                                            <  1:956675/149‑1 (MQ=255)                                                                                                   ctcagtcgaaagACTGGGCCTTTCGTTTTATCTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTg                                           >  1:877736/12‑149 (MQ=255)                                                                                                   ccacgTCTTTCGACTGAGCCATGCGTGTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTg                                           >  2:325355/5‑149 (MQ=255)                                                                                                    ccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGGTGCCTGGGGTATAGGGAATTAATTCTTGAAGACGAAGGCGCCTCGTGCTGCGCCTATTTTTATAGGTTGATGTCCTGGGAAGATCCCGCCGACCAGGCTTTCCACGACCGCGTGc                                          >  2:459584/1‑149 (MQ=37)                                                                                                    ccAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGc                                          <  2:846794/149‑1 (MQ=255)                                                                                                    ccAGTCCTGCGACTGGGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGc                                          <  1:309854/149‑1 (MQ=255)                                                                                                            tCGACGGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTAATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCAt                                  <  1:306530/149‑1 (MQ=255)                                                                                                               aCTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATATGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTc                               <  2:264810/149‑1 (MQ=255)                                                                                                                        ttCGTTTTTTGTGTTGGCTGGGGAATTGGGAATTAATTCTTGAAGACGAATGGGCATCGTGATACGCCTGTTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcgcg                      <  2:557956/149‑1 (MQ=255)                                                                                                                         tCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCgg                     <  2:774179/149‑1 (MQ=255)                                                                                                                         tCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCgg                     <  1:417062/149‑1 (MQ=255)                                                                                                                           gTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCAAGCCGACCAGGATTTACAAGACAGCGTGCCGCTCCATGTCGTTCGCGCGGtt                   >  1:128017/1‑149 (MQ=255)                                                                                                                           gTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTAGTGATACGCCTATTCTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTGCACGCCCGCGTGCCGCTCCATGTCGTTCGGGCGGtt                   >  2:797443/1‑149 (MQ=255)                                                                                                                            ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtc                  >  1:286981/1‑149 (MQ=255)                                                                                                                              ttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtctc                >  1:155969/1‑149 (MQ=255)                                                                                                                              ttATTTGATGCCTGCGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCACATGATACGCCTAATTTTCTAGGTTATTGCCATGGGAAGATCCACCAGACCAGGCTTTCCACGCCCGCGTGCCGCACCATGCGCTTCACGCGGTtctc                >  2:280082/1‑149 (MQ=255)                                                                                                                              ttATTTGATGCCTAGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCACGGTtctc                >  2:665053/1‑149 (MQ=255)                                                                                                                                    gATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAAc          >  1:811530/1‑149 (MQ=255)                                                                                                                                          tGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGCAACGCGCTg    >  1:370712/1‑149 (MQ=255)                                                                                                                                            gggaattgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGcc  >  1:80908/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                               CCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCC  >  CP009273/360141‑360428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.