New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2455831	2 (0.040)	41 (0.870)	34/296	0.4	95.3%	coding (1047/1341 nt)	fadL	long‑chain fatty acid outer membrane transporter
	?	CP009273	= 3577555	NA (NA)					intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E

GAAGTGTCAGGTTATAACCGTGTTGATCCACAGTGGGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2455685‑2455831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  <  CP009273/3577555‑3577408                                                                                                                                                                                                                                                                                                          GAAGTGTCATGTTATATCCGGGTTCATCCACAGTGGGCGATTCACTCTAGCCTGGCTTACACGAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGACACATGAAGGCTTTAAAGATGCTG‑G                                                                                                                                                    <  1:660006/149‑1        CAGTTTATAACCGTGATGATCCACAGTGGGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGAC                                                                                                                                             <  2:293504/149‑1        CAGGTTATAACCGTGTTGATCCACAGTGGGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGAC                                                                                                                                             >  2:500146/1‑149                 ACCGTGTTGATCCACAGTGGGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCGACTTA                                                                                                                                    >  2:380303/1‑149                         GATCCACAGTGGGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGT                                                                                                                            >  1:330788/1‑149                          ATCCACAGTGGGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGCCTCCAACTTATTGATAGTG                                                                                                                           >  1:707183/1‑149                                    GGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTC                                                                                                                 <  2:330788/149‑1                                     GCGATACAATATAACATGGCATACACCATCTGGAGTCAGTTTCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA                                                                                                                <  1:533681/149‑1                                            ACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGATG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATG                                                                                                         >  2:21214/1‑149                                                     TGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTCCAGATAATGCCCGATGAC                                                                                                >  2:28730/1‑149                                                         TTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG                                                                                            >  1:577541/1‑149                                                          gactgCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGGGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT                                                                                           <  1:668328/144‑1                                                           accCCAGCTGGCGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC                                                                                          <  2:640247/146‑1                                                            CACCAGCTGGAGTCAGTTCCGGCAGCTGAAAGCGACCTCAACCAGTTGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCA                                                                                         <  2:23614/149‑1                                                            CACCAGCTGGAGACAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCACCCTATTGATAGTGTTTTACGTTCAGATAATGCCCGATGACTTAGTCA                                                                                         >  2:400813/1‑149                                                             ACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCGGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAGGACTTTGTCAT                                                                                        >  1:235704/1‑149                                                              CCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAATATTCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG                                                                                       <  2:685123/149‑1                                                                AGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCA                                                                                     >  1:486033/1‑149                                                                            TTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTTCACCGATT                                                                         >  2:166790/1‑149                                                                              CCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAATATTCGGTTAGCTTTGAATGCCCGATTGCTTTGTCATGCAGCTCCACCGATTTT                                                                       >  2:756467/1‑149                                                                               CAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTG                                                                      >  2:633793/1‑149                                                                                     CTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCGTGCAGCTCCACCGATTTTGAGAACG                                                                >  1:485495/1‑149                                                                                       GAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTCCTCATGCAGCTCCACCGATTTTGAGAACGAC                                                              >  1:304029/1‑149                                                                                              ACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACT                                                       >  1:733143/1‑149                                                                                                      CAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCC                                               >  2:695035/1‑149                                                                                                         TGGCGACACGCTGTTACAGAAATATGTCGGGTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCGACCGATTTTGAGTGCGACAGCGACTTCCGTCCCAcc                                            >  1:343397/1‑147                                                                                                             GACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTG                                        <  2:540597/149‑1                                                                                                                        CCAGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGC                             <  1:80077/149‑1                                                                                                                          AGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCT                           >  2:482268/1‑149                                                                                                                          AGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCT                           >  2:205983/1‑149                                                                                                                          AGAAACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACCTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTGTGTCATGCAGCTCCACCGACTTTGAGAACGACAGCGACTTCCGTCCCAGCCGCGCCAGGCGCTGCCT                           >  1:163722/1‑149                                                                                                                          AGAAACATGAAGGCTTTAAAGATGCGG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCT                           >  1:681841/1‑149                                                                                                                            AAACGTGAAGGCTTTAACG‑TGGTGTGTAATGGCTCCAACTTGTTGATAGTGTTTTATGTTCAGATAATGCCCGCTGACTTTGTCATCCAGCTCCGCCGATTTTGAGAACGTCAGCGTCTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCA                         <  1:453962/149‑1                                                                                                                              ACATGAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCTAGCCGTGCCAGGTGCTGCCTCAGA                       <  2:577541/149‑1                                                                                                                                  GAAGGCTTTAAAGATGCTG‑GTAATGACTCCAACTGATTGATAGTGTTTTATGTTCAGATAATGCCCGACGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCA                   <  1:599712/149‑1                                                                                                                                   AAGGCTTTAAAGATGCGG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTTCCAGGTGCTGCCTCAGATTCAG                  >  2:490601/1‑149                                                                                                                                              GATGCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT       >  2:160639/1‑149                                                                                                                                                 GCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAGCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGATGCTGCCTCAGATTCAGGTTATGCCGCTCAA    >  1:185228/1‑149                                                                                                                                                 GCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAA    >  2:665283/1‑149                                                                                                                                                 GCTG‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAACTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAA    >  2:348074/1‑149                                                                                                                                                   TG‑GTAATGACTCCAACTTATTGATGGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCACAGATTCAGGTTATGCCGCTCAATT  >  2:390668/1‑149                                                                                                                                                                                                                                                                                                          GAAGTGTCAGGTTATAACCGTGTTGATCCACAGTGGGCGATTCACTATAGCCTGGCTTACACCAGCTGGAGTCAGTTCCAGCAGCTGAAAGCGACCTCAACCAGTGGCGACACGCTGTTCCAGAAACATGAAGGCTTTAAAGATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2455685‑2455831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑GTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT  <  CP009273/3577555‑3577408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.