New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	71 (1.510)	58/296	0.0	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTT  >  CP009273/360141‑360433                                                                                                                                                  |                                                                                                                                                    cccTCCGGGCCGTTGCTTCGCAACTTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGAGTTCACCGAAAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattggg                                                                                                                                                  <  2:587934/149‑1 (MQ=255)  ccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACCCCCCGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGACTGgggaattgagt                                                                                                                                                 >  2:111390/1‑146 (MQ=11)   cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgggaa                                                                                                                                                <  1:647169/149‑1 (MQ=38)         gCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGCCTTTCGACTGAGCCTTTCCTTTTACTTGATGCCTGGGGAATTGGGaattaatt                                                                                                                                          <  2:426835/149‑1 (MQ=255)            gTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCtt                                                                                                                                       <  2:410316/149‑1 (MQ=255)            gTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCtt                                                                                                                                       <  1:519017/149‑1 (MQ=255)            gTTGCTCCGCAACGTTCAAATCCGCTCCCGGCTGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAGGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTCATGCCTGGGGAATTGGGAATTAATTCtt                                                                                                                                       <  1:434630/149‑1 (MQ=255)              tGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGa                                                                                                                                     >  2:126267/1‑149 (MQ=255)               gCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCGTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGaa                                                                                                                                    <  1:29110/149‑1 (MQ=255)               gCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTATTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGaa                                                                                                                                    <  2:533350/149‑1 (MQ=255)                 ttCGCAACGTTCAAATCCGATCCCGGCGGATTTGTCCTACTCATGAGCCCATTCACCGAAAAAAATCAGATATAACGAAAGGCCCAGCCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGCATTGGGAATTAATCCTtgatga                                                                                                                                  >  1:200381/1‑149 (MQ=14)                      aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa                                                                                                                             <  2:531311/149‑1 (MQ=255)                       aCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAg                                                                                                                            <  2:9758/149‑1 (MQ=255)                                tCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattg                                                                                                                                                    <  1:700584/116‑1 (MQ=37)                                gccGCTCCCGGCGGATTTGGCCTGCTCGGGGGGGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTGCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTg                                                                                                                   <  2:341471/148‑1 (MQ=18)                                  cGCTCCCGGCGGAATTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAt                                                                                                                 >  2:554788/1‑149 (MQ=255)                                   gCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATa                                                                                                                <  2:743529/149‑1 (MQ=255)                                      cccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGc                                                                                                             <  2:411823/149‑1 (MQ=255)                                              aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTAttttt                                                                                                     <  1:755693/149‑1 (MQ=255)                                               tttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGACTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTta                                                                                                    <  2:514036/149‑1 (MQ=255)                                                ttGCCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTCTtat                                                                                                   <  1:111390/149‑1 (MQ=255)                                                   tCCTACTCAGGAGAGCGTTCACCGACAAACACCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAgg                                                                                                >  2:347565/1‑149 (MQ=255)                                                      tACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTa                                                                                             >  2:420302/1‑149 (MQ=255)                                                         tCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATg                                                                                          >  2:389733/1‑149 (MQ=255)                                                           aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAAAGTc                                                                                        >  2:256913/1‑149 (MQ=255)                                                               gagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATgg                                                                                    <  2:88176/149‑1 (MQ=255)                                                               gagCGTCCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATgg                                                                                    <  2:184351/149‑1 (MQ=255)                                                                     tCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATATCATGGGACGAt                                                                              >  1:623765/1‑149 (MQ=255)                                                                         cGACAACCAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTCTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGGGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAg                                                                          <  2:705838/149‑1 (MQ=255)                                                                          gACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGc                                                                         >  2:671848/1‑149 (MQ=255)                                                                           acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGcc                                                                        <  2:482782/149‑1 (MQ=255)                                                                                  acaGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAgg                                                                 <  1:157722/149‑1 (MQ=255)                                                                                      ataaaaatcaaGCCCCAGTCTTTCGACTGAGCCTGTCGTTCTATTTGATGCCTCGGAAATTGAGAACTAATTCTTGAAGACGAAAGGGCCTCGGCAAACGCATATTTTTACAGGTTATTGTCATGCGAAGATCCAGCCGACCAGGCctt                                                             >  1:363254/10‑149 (MQ=255)                                                                                              aaaGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGAGCCAGCCGACCAGGCTTTCCACGccc                                                     <  2:388952/149‑1 (MQ=255)                                                                                                  gCCCAGTCTTTCGACTGACCCTTTCGTTTTATTTGATGCCTGGGCGATGGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGCTACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCCGCCGACCAGGCTTTCCACGCCcgcgc                                                 >  1:170491/1‑148 (MQ=38)                                                                                                        tCTTTCGACTGTGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCt                                           <  2:322659/149‑1 (MQ=255)                                                                                                           ttCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCGTGGGAAGAGCCAGCCGCCCAGGCTTTCCACGCCCACGCGCCGCCCCa                                        >  1:282292/1‑149 (MQ=255)                                                                                                           ttCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCa                                        >  1:458601/1‑149 (MQ=255)                                                                                                              gACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGt                                     <  2:760756/149‑1 (MQ=255)                                                                                                                  gAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGtt                                 <  2:775066/149‑1 (MQ=255)                                                                                                                   aGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTACTTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTc                                <  1:51794/149‑1 (MQ=255)                                                                                                                   aGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTc                                <  1:661649/149‑1 (MQ=255)                                                                                                                      cTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcg                             <  2:145223/149‑1 (MQ=255)                                                                                                                       tttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCCTGTCGTTcgcgc                            >  1:177681/1‑149 (MQ=255)                                                                                                                            ttttGTTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAGAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGA‑CAGGCTTTCCACGCCCGCGTGACGCTCCATGTCGTTCGCGCGGTtct                      >  2:650532/1‑149 (MQ=255)                                                                                                                            ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTtc                       >  1:610046/1‑149 (MQ=255)                                                                                                                            ttttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTCATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCTCGCGTGCCGCTCAATGGCGTTAGCGCGGTtc                       >  1:502962/1‑149 (MQ=255)                                                                                                                              ttATGTGATGCCTGGGGGATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATGGGTTTGAGCAGTATGAAATTTGAGCCGATAAGGCCCTCCACGCCCGCGTGCCGCTCTGTGTCGGTCGCGCGGTtctc                     <  1:355785/149‑1 (MQ=255)                                                                                                                                  ttGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGaa                 >  1:89104/1‑149 (MQ=255)                                                                                                                                       gCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATGGGTGAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTTCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAAcgca            >  2:450914/1‑148 (MQ=255)                                                                                                                                          tGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGGCGGGTGATACGCCTGTTTTTATAGGGTAATGTCATGGGAAGATCCAGCCGACGAGGCTTTCCACGGCCGCGTGCCGCTCCATGTGGTTTGCGCGGTTTTGGGagaggggggg         >  1:357879/1‑140 (MQ=255)                                                                                                                                                attgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGt   <  2:484956/149‑1 (MQ=255)                                                                                                                                                 ttgggaattAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGtt  >  2:415955/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTGCCGCGTT  >  CP009273/360141‑360433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.