New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 22693462 (0.040)53 (1.120) 46/296 0.1 96.4% coding (595/1026 nt) yejE microcin C transporter YejABEF, permease subunit; ABC family
?CP009273 3576788 = NA (NA)intergenic (+10/‑55) yrhA/insA pseudogene, interrupted by IS1E/IS1 repressor TnpA

TAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCT  >  CP009273/3576640‑3576930
                                                                                                                                                    |                                                                                                                                               
tAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAACTGAATTTTATAGAAATAATGATGATTTCATCAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAg                                                                                                                                                 <  1:621472/149‑1 (MQ=255)
  gCCTCTCGAGTCCAGAACCTTCAGTAAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACCAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGt                                                                                                                                               <  2:265643/149‑1 (MQ=255)
   ccTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTg                                                                                                                                              >  2:315702/1‑149 (MQ=255)
    ctccCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGa                                                                                                                                             <  2:655118/149‑1 (MQ=255)
       tcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGTTGAtgc                                                                                                                                          >  2:549210/1‑149 (MQ=255)
        cGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtgct                                                                                                                                         <  2:584406/149‑1 (MQ=255)
          aTTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtgctgc                                                                                                                                       <  1:195630/149‑1 (MQ=255)
              cAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGATATGCTGCCAAc                                                                                                                                   >  1:684283/1‑149 (MQ=255)
                 aaCCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTa                                                                                                                                <  2:51198/149‑1 (MQ=255)
                 aaCCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAACGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGCTGCTGCCAACTTa                                                                                                                                >  1:505128/1‑149 (MQ=255)
                  acattgaGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTAc                                                                                                                               <  1:526414/143‑1 (MQ=255)
                  aCCTTCAGTGAAAAACCTTTTTGCCGTAAATGAATTTTATAGAGATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTAc                                                                                                                               <  1:81439/149‑1 (MQ=255)
                   ccTTCAGGTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACt                                                                                                                              <  1:271144/149‑1 (MQ=255)
                     ttCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGGGATCGGGGAACAAACCACTGCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGa                                                                                                                            >  2:725728/1‑149 (MQ=255)
                      tCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCGTGATCTACAAGAACGGGTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAAATTACTGAt                                                                                                                           >  1:91629/1‑149 (MQ=255)
                        aGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGAttt                                                                                                                         <  2:12846/149‑1 (MQ=255)
                           tAAAAACCTTTTTGTCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTCGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgt                                                                                                                      <  1:87642/149‑1 (MQ=255)
                            aaaaaCCTTTTTGCCGTAAATGAGTTTTCTAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAGTATTTACTTATGACATTAAAGGTGATGCTGCCACCTTACTGATTCAgtg                                                                                                                     >  1:530571/1‑149 (MQ=255)
                            aaaaaCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgtg                                                                                                                     <  2:616025/149‑1 (MQ=255)
                                   tttttGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGCTTTAGTGTatgatg                                                                                                              >  2:210120/1‑149 (MQ=255)
                                   tttttGCCGTAAATGAATTTTATAGAAATAATAATGATTTCATAAACCCTGATCTTCAAGTACGGTTAGTGCTCGGTGATTATAAAATTGCCCTATTTACTTATGCCGTTAAAGGTGTTGCTGTCAAGTTACTGATTTAGTGTatgatg                                                                                                              >  1:338251/1‑149 (MQ=255)
                                   tttttGCAGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatgatg                                                                                                              <  2:108811/149‑1 (MQ=255)
                                     tttGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGgt                                                                                                            <  2:464529/149‑1 (MQ=255)
                                              aattaattTTATATAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTCACTGCTTTAGTGTATGATGGTGTTTTTGAg                                                                                                   <  2:398861/149‑1 (MQ=255)
                                               aTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAgg                                                                                                  <  2:719554/149‑1 (MQ=255)
                                                   aTTTTATAGAAATAATTATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCt                                                                                              <  1:185377/149‑1 (MQ=255)
                                                      ttATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCa                                                                                           <  2:167870/149‑1 (MQ=255)
                                                      ttATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGGGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCa                                                                                           <  1:585430/149‑1 (MQ=255)
                                                        ataGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGt                                                                                         <  1:631233/149‑1 (MQ=255)
                                                              atactgcggttgtgaTAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTc                                                                                   >  1:8214/15‑149 (MQ=255)
                                                                   gatgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGttt                                                                              <  2:113980/149‑1 (MQ=255)
                                                                   gactgtttCCTAATCCCTGATCCACAAGAACTGTTAGGTATCTGGGACTATAGCATTTCAATATTTACTTATGACATTAAATGTGATGCTGCCGACTTACTGATTTAGTGTATGATGGTGTTTTTTAGTTGCTTCAGTGGCTTCTGttt                                                                              <  1:310971/144‑1 (MQ=21)
                                                                       atTTCATAATCCCTAATCCACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAt                                                                          <  2:245792/149‑1 (MQ=255)
                                                                       atTTCATAAACCCTGATCTTCAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAt                                                                          <  2:2678/149‑1 (MQ=255)
                                                                         ttCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCa                                                                       >  1:617342/1‑149 (MQ=255)
                                                                              aaaCCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGt                                                                  <  2:455558/149‑1 (MQ=255)
                                                                              aaaCCCTGAACTAGAAGGACGGTTAGGGGTCGGTGATTGTAGTGCTTCAATACTGACTTTTGCCATTAAAGGCGATGCGGCCAGCTTCTTCATTTAGTGTATGATGGTGTTTTTGAGTTCCTCCAGCGGCTGCTGTTTCGGTCAGCTGt                                                                  <  1:200068/149‑1 (MQ=12)
                                                                                aCCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTcc                                                                >  1:239521/1‑149 (MQ=255)
                                                                                 cccTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTAGGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTATATCAGCTGTccc                                                               >  2:25907/1‑149 (MQ=255)
                                                                                  ccTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGAAATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcct                                                              >  2:768461/1‑149 (MQ=255)
                                                                                   cTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcctc                                                             <  2:448175/149‑1 (MQ=255)
                                                                                         tACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTc                                                       <  2:338251/149‑1 (MQ=255)
                                                                                          aCAAGAACGGTGAGTGATCGGGGATTATAGCAGTACAATATTTACTTATGACATTGAGGGTGATGATGCCAACTGAGTGATTTAGTGTATGATGGGGTTTTTGAGGTGCGCCGGTGGCGTCTGTCTCTATCGGGTGTACCTCACGTTCa                                                      >  1:642839/1‑149 (MQ=255)
                                                                                            aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGc                                                    <  2:588428/149‑1 (MQ=255)
                                                                                            aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGc                                                    <  1:676893/149‑1 (MQ=255)
                                                                                                   gTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGAc                                             >  2:156279/1‑149 (MQ=255)
                                                                                                          aTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtgg                                      >  1:329953/1‑149 (MQ=255)
                                                                                                           ttggggATTATAGCTGTTCAATATTTACTTATGACATTAAAGGTTATGCTGCCAACTTACTGATTTAGTGTATGATTGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtggt                                     <  1:25528/147‑1 (MQ=255)
                                                                                                           gcGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTAAGATGGTGTTTTTGAGGTGCTCCAGTGGTTTCTGTTTCGATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtggt                                     <  1:404489/148‑1 (MQ=255)
                                                                                                             ggggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGGTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTCCTGTTTCTATCAGCTGTCCCTCCTGCTCAGCTACTGCCgggaggttgc                                   >  2:644224/1‑142 (MQ=18)
                                                                                                                        cATTTCAATATTTACTTATGCCATTAAATTTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaa                        >  1:393323/1‑149 (MQ=255)
                                                                                                                              aaTATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGCTTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTCTATGCACCGGTCTCTCCTGTTCAGCTACTGACGGGGTGGTGCGTCATGGCAAAAGCAcc                  >  2:179906/1‑149 (MQ=14)
                                                                                                                              aaTATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAcc                  <  1:210120/149‑1 (MQ=255)
                                                                                                                               atatTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAccg                 <  1:156279/149‑1 (MQ=255)
                                                                                                                                  tttACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTGTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAACCAccgccg              >  2:268972/1‑149 (MQ=255)
                                                                                                                                       ttATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGGGCGTAACGCGCAAAGCAAAGCCggcgat         >  1:704615/1‑145 (MQ=14)
                                                                                                                                              aTTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCt  >  2:621655/1‑149 (MQ=33)
                                                                                                                                                    |                                                                                                                                               
TAGCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCT  >  CP009273/3576640‑3576930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.