New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	47 (2.170)	39/272	NT	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGA  >  CP009273/359964‑360251                                                                                                                                             |                                                                                                                                                    cAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCTGATCCCCAATTCCTgg                                                                                                                                             <  1:251569/149‑1 (MQ=255)    gCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAACGGCTTGCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTAAAACATGAGAATTCCGATCCCCAATTcat                                                                                                                                               >  2:279101/1‑142 (MQ=255)    gCAGTTCAATCAACTGTTTACCGTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCt                                                                                                                                               <  2:28436/144‑1 (MQ=255)        ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCGGATCCCCAATTCTTGGCAGTTTa                                                                                                                                      >  1:298801/1‑149 (MQ=255)        ttCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCAAGCGGGTTGATTTCTAGCGCCCATATTTATTGCAGGAGCTCCGGTGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa                                                                                                                                      >  1:390838/1‑149 (MQ=255)               aaCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg                                                                                                                                    >  2:144552/1‑144 (MQ=255)                                    aCATCCAGAGGCACTTCACCGCTTGCCCGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCg                                                                                                          <  1:61926/149‑1 (MQ=255)                                    aCATCCAGAGGCACATCACCGTTTGCCATCGGCTTACCATCCAGCCCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCg                                                                                                          <  1:305083/149‑1 (MQ=255)                                        ccAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGcc                                                                                                      <  1:346487/149‑1 (MQ=255)                                              gCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGAGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt                                                                                                >  1:204083/1‑149 (MQ=255)                                               cACTTCACCGCTTGCCAGCGGCTTACCATCCATCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCtt                                                                                               <  1:306136/149‑1 (MQ=255)                                                  tccACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc                                                                                                 <  2:236565/142‑1 (MQ=255)                                                   tCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCa                                                                                           >  1:164989/1‑149 (MQ=255)                                                          ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATAGCGGGCGTCATGCACGACACCCTCCGGTCCGTTGCTTCGCAACGTTCa                                                                                    >  1:152458/1‑149 (MQ=255)                                                                  ggCTGACCATCCGGCGCCACCCTCCAGTGCAGGTGCTCCGATGATTAGCTGTCAAACATGCGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGTAACGTTCAAAt                                                                                 <  2:112821/144‑1 (MQ=25)                                                                     ttACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGCGGCTTCTTGTCCCCACTTCGGGCGAGGTGATGGCGGGCGTCCTGCACGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTccc                                                                         >  1:94646/1‑149 (MQ=21)                                                                         cATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATATGATAACAAAGATGAAAATTCAGATCCCCCACTTCCGGCAGATTATGCCGGGCGTCCTGCCCGCCACCCTCCGGGCCGCTGCTTCGCAACGTTCAAATACGcccc                                                                          >  2:343481/1‑144 (MQ=18)                                                                                               cagaggCTCCGATGACGAGCTGTCAAACATGGGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAgg                                                    <  2:226218/139‑1 (MQ=255)                                                                                                       ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTTCTCAGGAAAGCGTTCACCg                                       >  1:252870/1‑149 (MQ=255)                                                                                                                 gCTGTCAAACATGAGAATTCCGAGCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa                                  >  2:241163/1‑144 (MQ=255)                                                                                                                                 cctccggcccccACTCCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa                  <  2:311148/136‑1 (MQ=255)                                                                                                                                 aTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa                  <  2:347918/144‑1 (MQ=255)                                                                                                                                      gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAACCTCCGGGCCGTGGCTTCGCAAGGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGCGAGCGTTCACCGACAAACAACAAATACAACGAACGGCCCAGtg        >  1:168182/1‑148 (MQ=11)                                                                                                                                            cAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGcccgagcgaccga  >  1:346101/1‑139 (MQ=255)                                                                                                                                             |                                                                                                                                                    CAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGA  >  CP009273/359964‑360251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.