Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC CP009273 3,178,254 IS5 (+) +4 bp 46.7% coding (56‑59/291 nt) yqiC → BMFP family putative fusogenic protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2282398 =NA (NA)5 (0.230) 5/270 NT 37.7% noncoding (1195/1195 nt) IS5 repeat region
?CP009273 3178254 = 8 (0.380)coding (56/291 nt) yqiC BMFP family putative fusogenic protein
* ? CP009273 = 2283592NA (NA)9 (0.420) 9/272 NT 52.2% noncoding (1/1195 nt) IS5 repeat region
?CP009273 = 3178257 8 (0.380)coding (59/291 nt) yqiC BMFP family putative fusogenic protein

TTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACT  >  CP009273/3178121‑3178395
                                                                                                                                        |                                                                                                                                          
ttCACATAAGTCTGGTTTATGACTTGCCCTTATCGCACTACAATGGCACTCAACACCTATCATTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGa                                                                                                                                <  1:311980/149‑1 (MQ=255)
     aTAAGTCTGTTTTATGACTTACCCTTATCGCACTACACTGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGTCTAAggaaggtgcgaa                                                                                                                                >  2:41861‑M2/1‑132 (MQ=255)
      tAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaac                                                                                                                               <  2:102664‑M2/144‑14 (MQ=255)
             gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGAt                                                                                                                   <  1:44570‑M2/29‑1 (MQ=255)
                     aCTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacacgtccctgatatga                                                                                                                <  2:156600‑M2/144‑29 (MQ=255)
                         aCCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGTAAGATGTGgaga                                                                                                            >  2:318436/1‑144 (MQ=255)
                            ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGCGaaaa                                                                                                         >  2:79566‑M2/106‑144 (MQ=255)
                                tCGCACTACAATGGCACTCAACACCTATCAGGACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGTAAGATGTGGAGAAAAAAATCCGcc                                                                                                <  1:234370/149‑1 (MQ=255)
                                gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGcc                                                                                                >  1:87524‑M2/102‑149 (MQ=255)
                                    aCTACAAGGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                            >  1:171520‑M2/1‑101 (MQ=255)
                                             gCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCAAGGTTCACGAATCAGTGCCTAAggaaggtgcgaacaagtccctgatatgaggtcatgtttgtgagctggagccatagaa                                                                                   <  1:5659‑M2/149‑58 (MQ=255)
                                                 tCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTACggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagc                                                                                    <  2:189464‑M2/144‑57 (MQ=255)
                                                   aaCACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGTAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCt                                                                             >  1:385496/1‑149 (MQ=255)
                                                    acacCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGTAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCta                                                                            >  1:107043/1‑148 (MQ=255)
                                                              gTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca                                                                       >  2:339072‑M2/1‑75 (MQ=255)
                                                                 cAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATGAATGCCTAAAGGAATCAGGGAGTTCGGGTAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGAcc                                                               <  1:268826/149‑1 (MQ=255)
                                                                                                       gaagaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGc                              >  2:154485‑M2/31‑144 (MQ=255)
                                                                                                       aaaTCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGTAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTc                         >  1:219788/1‑149 (MQ=255)
                                                                                                        aaTCGCTCGCCAGGTTCACGAATCAATGCCTAAggaaggtgcgaacaaatccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgcattcagccgtaagcac                        <  1:18228‑M2/149‑117 (MQ=255)
                                                                                                          gaatttccccgcttattcgcaccttccCTAAAGGAATCAGGGAGTTCGGGGACGACGTGGGGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGAGGTCCAAACGCAAGTCCTg                      >  1:77918‑M2/28‑149 (MQ=255)
                                                                                                                         aCGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGTAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGaa       >  1:324252/1‑149 (MQ=255)
                                                                                                                              tCAATGCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt  <  1:328738‑M2/149‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                          
TTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGGGAAACTACAATGATTGACCCGAAAAAAATTGAGCAAATCGCTCGCCAGGTTCACGAATCAATGCCTAAAGGAATCAGGGAGTTCGGGGAAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACT  >  CP009273/3178121‑3178395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.