New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3527855	71 (0.870)	6 (0.080)	5/274	11.1	8.0%	intergenic (+56/+20)	pck/envZ	phosphoenolpyruvate carboxykinase/sensory histidine kinase in two‑component regulatory system with OmpR
	?	CP009273	= 3527861	73 (0.970)					intergenic (+62/+14)	pck/envZ	phosphoenolpyruvate carboxykinase/sensory histidine kinase in two‑component regulatory system with OmpR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3527698‑3527855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacgggaggcGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCGCC  <  CP009273/3527861‑3527715                                                                                                                                                                                                                                                                                                                   GAAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGTGGAATATCTATCCAGTATCTTATAAAAAGCAA                                                                                                                                                               >  2:503178/1‑148  AAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTGTCCAGTATCTTATCGAAAGCAAA                                                                                                                                                              >  2:857052/1‑148      AGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAACCTGGAGAATACCTATCCAGTATCTTTCAGGAAGCAAAgcag                                                                                                                                                          >  2:213578/1‑144       GCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                        <  1:1162573/149‑1        CCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                        <  2:104027/148‑1         CGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTCTCCAGTATCTTATAGAAAGCCAAACGGGAG                                                                                                                                                       >  2:185465/1‑148                         CTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGCAACTGTCGTGATGTGAAGTTGGATAATATCTATACGGCATCTTATAGAAAGCAATACGGGAGGCGAAGGTGCCTCCCG                                                                                                                                       <  2:880299/148‑1                         CTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGTGCCTCCCG                                                                                                                                       <  2:517767/148‑1                           GTTTATCGACAACTTCGATAAACACACCGACACCCCTGCGGGCGCCGCGCTGGTGGCGGCTGGTCCGAAACTGTACTGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGTGCCTCCCGTT                                                                                                                                     <  2:935949/148‑1                             TTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGTGCCTCCCGTTTT                                                                                                                                   <  2:1156334/148‑1                                                     CCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATCTCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGAT                                                                                                          <  1:539794/149‑1                                                                          CGCTGGGAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCAT                                                                                      <  2:62784/148‑1                                                                                                                                                      ACGGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACA          >  2:1092849/1‑148                                                                                                                                                             GCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGCTAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCGCC  <  1:1036249/149‑1                                                                                                                                                             GCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCGCC  >  1:780758/1‑149                                                                                                                                                                                                                                                                                                                   GAAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3527698‑3527855 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacgggaggcGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCGCC  <  CP009273/3527861‑3527715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.