New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4532499 =109 (0.910)30 (0.270) 28/278 6.3 23.7% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?CP009273 4532813 = 91 (0.810)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 109 total aligned reads displayed.

CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  CP009273/4532351‑4532646
                                                                                                                                                     |                                                                                                                                                   
ccATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGAAAAt                                                                                                                                                     >  1:940121/1‑149 (MQ=255)
 cATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAAtt                                                                                                                                                    <  1:1832514/149‑1 (MQ=255)
   tACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTgg                                                                                                                                                  >  1:321646/1‑149 (MQ=255)
   tACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTgg                                                                                                                                                  <  1:1995960/149‑1 (MQ=255)
     cTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTgggg                                                                                                                                                <  1:525473/149‑1 (MQ=255)
        ggCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATTAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCa                                                                                                                                             <  1:922689/148‑1 (MQ=255)
          cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTGTGGGAAAGAAATAATCTCATAAACGAATAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCaaaa                                                                                                                                           >  1:1558404/1‑149 (MQ=255)
           gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAATACA‑AATAAATACAAGACAATTGGGGcgattt                                                                                                                                          >  1:537426/1‑144 (MQ=255)
            ttATACCGCCAGTAATGCTGCTCGTTTTGCCGTATTATGGGCAACAGCTTATCCCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCatttt                                                                                                                                         <  1:1152487/149‑5 (MQ=255)
            ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACt                                                                                                                                         >  1:923185/1‑149 (MQ=255)
               taCCGCCAGGAATGCGTCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTTATAAACGAAAAATTAAAAAGAGAAGATGTTTGATTTAACTGATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGTCAATTGGGGCCattttgac                                                                                                                                      <  2:97519/149‑8 (MQ=255)
                 ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTcgc                                                                                                                                    >  2:1378719/1‑147 (MQ=255)
                 ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                    >  1:225564/1‑149 (MQ=255)
                  cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCat                                                                                                                                   <  2:639766/149‑1 (MQ=255)
                   gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCata                                                                                                                                  >  1:1366173/1‑149 (MQ=255)
                    ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCattttgactcata                                                                                                                                 <  2:1177727/149‑13 (MQ=255)
                       gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat                                                                                                                              >  1:1162607/1‑149 (MQ=255)
                         aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa                                                                                                                            <  1:182831/149‑1 (MQ=255)
                           tgctgcTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGCGACCAAACGGTCCATATCataaat                                                                                                                          >  2:909629/1‑149 (MQ=255)
                             cttctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                        <  1:1067011/146‑1 (MQ=255)
                             ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATATAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                        <  1:1333701/149‑1 (MQ=255)
                              tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg                                                                                                                       >  1:16987/1‑149 (MQ=255)
                               gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt                                                                                                                      >  2:970288/1‑149 (MQ=255)
                                 tCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                    >  1:1562280/1‑149 (MQ=255)
                                        gCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt                                                                                                             <  2:460576/149‑1 (MQ=255)
                                         ccGGAATATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAAATGTCCATAACATAAATAAGTAACGTAttat                                                                                                            >  2:704521/1‑147 (MQ=255)
                                           tgATTATCGGAAAGCAATACTGTCTTAGACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTACTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGGCCATATCATAAATAAGTTACGTAtttttt                                                                                                          <  1:1261542/148‑1 (MQ=255)
                                           ggAGTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt                                                                                                          >  2:1411773/1‑149 (MQ=255)
                                            gATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                         <  2:29105/149‑1 (MQ=255)
                                             aTTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                        <  2:415610/149‑1 (MQ=255)
                                             aTTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                        <  2:1631519/149‑1 (MQ=255)
                                              ttATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc                                                                                                       <  1:1755996/149‑1 (MQ=255)
                                                aggggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                     <  1:1147259/147‑1 (MQ=255)
                                                aggggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAAAAAAAATAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAGATAAGTTACGTATTTTTTCTCaa                                                                                                     <  2:1258036/147‑1 (MQ=255)
                                                  gggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGAGAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc                                                                                                   >  1:1344442/1‑149 (MQ=255)
                                                    gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAAA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                 >  2:1110083/1‑149 (MQ=255)
                                                     aaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa                                                                                                >  1:1387084/1‑149 (MQ=255)
                                                          aataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                           <  1:599148/149‑1 (MQ=255)
                                                          aataatCTCATAAACAAAAAAAAAAAAAGAGAAGAGGTTTGATCTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                           <  2:943809/149‑1 (MQ=255)
                                                              atCCCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTACTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa                                                                                       <  1:210309/149‑1 (MQ=255)
                                                                 tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa                                                                                    >  1:1091076/1‑149 (MQ=255)
                                                                   aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                  >  1:1587132/1‑149 (MQ=255)
                                                                    tAAACGAAAAATTAAAAAGAGAAGAGGTTTGCTTTAACTTATTGATAATAAAGTTAAAAAAAAC‑AATAAATACACGACAATTGGGGCCAAACTGTACATGTCTTAAATAAGTTACGGATTTTTTCTCAAACATACGAATATTCaacaac                                                                                 >  1:525758/1‑149 (MQ=255)
                                                                     aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATAACATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                                >  1:881513/1‑149 (MQ=255)
                                                                      aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                               <  1:1860228/149‑1 (MQ=255)
                                                                        cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGAATAACAATATTAAAAAACGaga                                                                             >  1:1075819/1‑147 (MQ=255)
                                                                        agAAAAATTAAAAAGAGAAGAGGTTTGATTTATCTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACa                                                                             <  2:466557/148‑1 (MQ=255)
                                                                         gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTAAAGCATAAAAATATTAAAAAACGACaa                                                                            >  1:229261/1‑149 (MQ=255)
                                                                           aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCACGCATAAAAATATTAAAAAACGACaaaa                                                                          >  1:1467301/1‑149 (MQ=255)
                                                                                  aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                   >  2:156482/1‑149 (MQ=255)
                                                                                   aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAACAGAATCTa                                                                  >  2:1669569/1‑149 (MQ=255)
                                                                                    aagagaagcgGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAAATAATGACGCGAAG‑CAATCGGGGCCAAGCTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  1:882760/149‑1 (MQ=255)
                                                                                    aagagaagagGTTTGATTTAGCTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATACATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  2:1597120/149‑1 (MQ=255)
                                                                                    aagagaagagGTTTGATTTACCTTACAAATAATAAAATTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  2:299850/149‑1 (MQ=255)
                                                                                    aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  2:875424/149‑1 (MQ=255)
                                                                                    aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                 <  1:2001862/149‑1 (MQ=255)
                                                                                     agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTAACGTATTTTTTCTCAAGCATAAAACTATATACGAACAACAAAGAGAAGCTAAc                                                                >  1:548321/1‑149 (MQ=255)
                                                                                        gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTGCTCCACGACAAAAAGCATCTAACTgg                                                             <  2:1322466/149‑2 (MQ=255)
                                                                                         aagagGTTTTATTTAACTTATTGATAATAAAGATAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTgct                                                            <  1:906498/149‑3 (MQ=255)
                                                                                         aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                            <  1:319796/149‑1 (MQ=255)
                                                                                          agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                           <  2:420968/149‑1 (MQ=255)
                                                                                          agagGGTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                           <  2:206031/149‑1 (MQ=255)
                                                                                              gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                                       >  2:419573/1‑149 (MQ=255)
                                                                                              gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                                       >  1:645559/1‑149 (MQ=255)
                                                                                               tttGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAATCTCAAGATTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat                                                      >  1:1462494/1‑149 (MQ=255)
                                                                                                     ttAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                >  2:1727687/1‑149 (MQ=255)
                                                                                                        aCTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTTTTTTTTAAAATATTAAAAAACGACAAAAATCATCTAACTGTTTGATATGTAAattat                                             >  2:1794318/1‑149 (MQ=255)
                                                                                                          ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                           <  1:1993584/149‑1 (MQ=255)
                                                                                                          ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                           <  2:1274627/149‑1 (MQ=255)
                                                                                                          ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                           <  2:1254827/149‑1 (MQ=255)
                                                                                                          ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGGCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAAAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                           <  2:982458/149‑1 (MQ=255)
                                                                                                          ttATTGATAAGAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGGCCATAACATAAAAAAGTTACGTATGTCTACGCAAGCATAAAAATATTAAAAAACGAGAAAAAGCCTCTAACGGTTTGATATGTAAattatta                                           >  2:82961/1‑148 (MQ=255)
                                                                                                            aTTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCt                                         >  1:1389241/1‑149 (MQ=255)
                                                                                                               gATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                      <  1:1528806/149‑1 (MQ=255)
                                                                                                               gATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                      >  1:764585/1‑149 (MQ=255)
                                                                                                                   ataaAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTaa                                  <  1:1025129/149‑1 (MQ=255)
                                                                                                                     aaaGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaat                                <  2:1055683/149‑1 (MQ=255)
                                                                                                                      aatttAAAAAAACC‑AATAAATACAAGACAATTGGGGCCAAACTGCCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatt                               <  2:1458115/146‑1 (MQ=255)
                                                                                                                         ttAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                            <  2:14867/149‑1 (MQ=255)
                                                                                                                         ttAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                            >  2:1799586/1‑149 (MQ=255)
                                                                                                                           aaaaaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCTAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                          <  1:1003056/149‑1 (MQ=255)
                                                                                                                           aaaaaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                          <  2:314809/149‑1 (MQ=255)
                                                                                                                           aaaaaaaCA‑AATAAATACAAGACAAGTTGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGAATCTAACTGTTTGATATGTAAATTATTTCTAGTGTAAATTAAttt                          >  2:1707726/1‑149 (MQ=255)
                                                                                                                            aaaaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTc                         >  1:801883/1‑149 (MQ=255)
                                                                                                                              aaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                       <  2:1439258/149‑1 (MQ=255)
                                                                                                                               aaaCA‑AATAAATACAAGACAATTGGGGCCAGACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAGAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTccca                      >  1:1053423/1‑149 (MQ=255)
                                                                                                                               aaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAGATTAATTTcaca                      >  1:1054498/1‑149 (MQ=255)
                                                                                                                                aaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTCAAAAAAGTCAAAGAGCATCTCACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACAt                     >  1:965498/1‑149 (MQ=255)
                                                                                                                                   a‑aataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                  >  2:1616947/1‑149 (MQ=255)
                                                                                                                                       taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc               <  2:852698/149‑1 (MQ=255)
                                                                                                                                         aataCAAGACAATTGGGGCCAAACTGTCCATATAATAAATAAGTTACGTCTTTTTTCTCAAGCATAAAACTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCg             >  2:66736/1‑149 (MQ=255)
                                                                                                                                          ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc            <  1:89101/149‑1 (MQ=255)
                                                                                                                                           taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAATTTAATTTTACATCACCTCCGCt           >  2:831967/1‑149 (MQ=255)
                                                                                                                                            aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCta          <  1:773968/149‑1 (MQ=255)
                                                                                                                                              aaGACAACCGGGCCGAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata        <  1:1255618/149‑1 (MQ=255)
                                                                                                                                               aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTatat       <  2:1466919/149‑1 (MQ=255)
                                                                                                                                                   aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaa   >  2:923217/1‑149 (MQ=255)
                                                                                                                                                    aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaaa  <  1:91901/149‑1 (MQ=255)
                                                                                                                                                    aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAACTTCACATCACCTCCGCTATATGTaaa  <  2:926257/149‑1 (MQ=255)
                                                                                                                                                    aTTGAGGCCAAACTGGCTATATCATAAATAAGTTACTTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCCATATGTaaa  <  2:63932/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAA  >  CP009273/4532351‑4532646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.