New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4532507103 (0.860)23 (0.200) 22/278 8.1 19.8% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?CP009273 = 4532803 90 (0.800)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 108 total aligned reads displayed.

TGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGT  >  CP009273/4532359‑4532654
                                                                                                                                                     |                                                                                                                                                   
ggCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATTAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCa                                                                                                                                                     <  1:922689/148‑1 (MQ=255)
  cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTGTGGGAAAGAAATAATCTCATAAACGAATAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCaaaa                                                                                                                                                   >  1:1558404/1‑149 (MQ=255)
  cGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCaaa                                                                                                                                                   <  1:1681861/149‑1 (MQ=255)
    ttATACCGCCAGTAATGCTGCTCGTTTTGCCGTATTATGGGCAACAGCTTATCCCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCatttt                                                                                                                                                 <  1:1152487/149‑5 (MQ=255)
    ttATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACt                                                                                                                                                 >  1:923185/1‑149 (MQ=255)
       taCCGCCAGGAATGCGTCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTTATAAACGAAAAATTAAAAAGAGAAGATGTTTGATTTAACTGATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGTCAATTGGGGCCattttgac                                                                                                                                              <  2:97519/149‑8 (MQ=255)
         ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTcgc                                                                                                                                            >  2:1378719/1‑147 (MQ=255)
         ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                            >  1:225564/1‑149 (MQ=255)
          cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCat                                                                                                                                           <  2:639766/149‑1 (MQ=255)
           gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCata                                                                                                                                          >  1:1366173/1‑149 (MQ=255)
            ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAACCA‑AATAAATACAAGACGATTGGGGCCattttgagtcata                                                                                                                                         >  2:735745/1‑137 (MQ=255)
            ccAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCattttgactcata                                                                                                                                         <  2:1177727/149‑13 (MQ=255)
               gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAGGACAATTGTGGCCAAACTGTCCCTATCac                                                                                                                                      >  1:252143/1‑148 (MQ=255)
               gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat                                                                                                                                      >  1:1162607/1‑149 (MQ=255)
                 aaTGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataa                                                                                                                                    <  1:182831/149‑1 (MQ=255)
                   tgctgcTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGCGACCAAACGGTCCATATCataaat                                                                                                                                  >  2:909629/1‑149 (MQ=255)
                     cttctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                                <  1:1067011/146‑1 (MQ=255)
                      tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg                                                                                                                               >  1:16987/1‑149 (MQ=255)
                       gctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt                                                                                                                              >  2:970288/1‑149 (MQ=255)
                         tCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                            >  1:1562280/1‑149 (MQ=255)
                                gCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt                                                                                                                     <  2:460576/149‑1 (MQ=255)
                                   tgATTATCGGAAAGCAATACTGTCTTAGACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTACTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGGCCATATCATAAATAAGTTACGTAtttttt                                                                                                                  <  1:1261542/148‑1 (MQ=255)
                                   ggAGTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt                                                                                                                  >  2:1411773/1‑149 (MQ=255)
                                   gaataaTGAGAAAGAAATAATCTCAAAAACGAAAAATTAAAAAGAGAAGAAGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt                                                                                                                  <  2:295954/144‑1 (MQ=255)
                                     aTTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                                <  2:415610/149‑1 (MQ=255)
                                     aTTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct                                                                                                                <  2:1631519/149‑1 (MQ=255)
                                        aggggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                             <  1:1147259/147‑1 (MQ=255)
                                        aggggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAAAAAAAATAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAGATAAGTTACGTATTTTTTCTCaa                                                                                                             <  2:1258036/147‑1 (MQ=255)
                                          gggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGAGAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc                                                                                                           >  1:1344442/1‑149 (MQ=255)
                                            gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAAA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt                                                                                                         >  2:1110083/1‑149 (MQ=255)
                                             aaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa                                                                                                        >  1:1387084/1‑149 (MQ=255)
                                                 aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa                                                                                                    >  1:1268918/1‑149 (MQ=255)
                                                  aataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                                   <  1:599148/149‑1 (MQ=255)
                                                  aataatCTCATAAACAAAAAAAAAAAAAGAGAAGAGGTTTGATCTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                                   <  2:943809/149‑1 (MQ=255)
                                                      atCCCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTACTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa                                                                                               <  1:210309/149‑1 (MQ=255)
                                                         tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa                                                                                            >  1:1091076/1‑149 (MQ=255)
                                                           aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                          >  1:1587132/1‑149 (MQ=255)
                                                            tAAACGAAAAATTAAAAAGAGAAGAGGTTTGCTTTAACTTATTGATAATAAAGTTAAAAAAAAC‑AATAAATACACGACAATTGGGGCCAAACTGTACATGTCTTAAATAAGTTACGGATTTTTTCTCAAACATACGAATATTCaacaac                                                                                         >  1:525758/1‑149 (MQ=255)
                                                             aaaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATAACATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACg                                                                                        >  1:881513/1‑149 (MQ=255)
                                                              aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                       <  1:1860228/149‑1 (MQ=255)
                                                                cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGAATAACAATATTAAAAAACGaga                                                                                     >  1:1075819/1‑147 (MQ=255)
                                                                agAAAAATTAAAAAGAGAAGAGGTTTGATTTATCTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACa                                                                                     <  2:466557/148‑1 (MQ=255)
                                                                 gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTAAAGCATAAAAATATTAAAAAACGACaa                                                                                    >  1:229261/1‑149 (MQ=255)
                                                                   aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCACGCATAAAAATATTAAAAAACGACaaaa                                                                                  >  1:1467301/1‑149 (MQ=255)
                                                                          aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                           >  2:156482/1‑149 (MQ=255)
                                                                           aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAACAGAATCTa                                                                          >  2:1669569/1‑149 (MQ=255)
                                                                           aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAAACAAAGCATCTa                                                                          >  2:1528285/1‑149 (MQ=255)
                                                                            aagagaagcgGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAAATAATGACGCGAAG‑CAATCGGGGCCAAGCTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                         <  1:882760/149‑1 (MQ=255)
                                                                            aagagaagagGTTTGATTTAGCTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATACATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                         <  2:1597120/149‑1 (MQ=255)
                                                                            aagagaagagGTTTGATTTACCTTACAAATAATAAAATTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                         <  2:299850/149‑1 (MQ=255)
                                                                            aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                         <  1:2001862/149‑1 (MQ=255)
                                                                            aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                         <  2:875424/149‑1 (MQ=255)
                                                                             agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTAACGTATTTTTTCTCAAGCATAAAACTATATACGAACAACAAAGAGAAGCTAAc                                                                        >  1:548321/1‑149 (MQ=255)
                                                                                gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTGCTCCACGACAAAAAGCATCTAACTgg                                                                     <  2:1322466/149‑2 (MQ=255)
                                                                                 aagagGTTTTATTTAACTTATTGATAATAAAGATAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTgct                                                                    <  1:906498/149‑3 (MQ=255)
                                                                                 aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGtt                                                                    <  1:319796/149‑1 (MQ=255)
                                                                                  agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                   <  2:420968/149‑1 (MQ=255)
                                                                                  agagGGTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                   <  2:206031/149‑1 (MQ=255)
                                                                                      gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                                               >  2:419573/1‑149 (MQ=255)
                                                                                       tttGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAATCTCAAGATTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat                                                              >  1:1462494/1‑149 (MQ=255)
                                                                                             ttAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                        >  2:1727687/1‑149 (MQ=255)
                                                                                                aattATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAatttt                                                     >  1:806173/3‑147 (MQ=255)
                                                                                                aCTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTTTTTTTTAAAATATTAAAAAACGACAAAAATCATCTAACTGTTTGATATGTAAattat                                                     >  2:1794318/1‑149 (MQ=255)
                                                                                                  ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  1:1993584/149‑1 (MQ=255)
                                                                                                  ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  2:1274627/149‑1 (MQ=255)
                                                                                                  ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  2:1254827/149‑1 (MQ=255)
                                                                                                  ttATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGGCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAAAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  2:982458/149‑1 (MQ=255)
                                                                                                  ttATTGATAAGAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGGCCATAACATAAAAAAGTTACGTATGTCTACGCAAGCATAAAAATATTAAAAAACGAGAAAAAGCCTCTAACGGTTTGATATGTAAattatta                                                   >  2:82961/1‑148 (MQ=255)
                                                                                                    aTTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCt                                                 >  1:1389241/1‑149 (MQ=255)
                                                                                                       gATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                              <  1:1528806/149‑1 (MQ=255)
                                                                                                       gATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                              >  1:764585/1‑149 (MQ=255)
                                                                                                       gATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTAGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAATAGAAAACGACAAAAAGCATCTAACTGTTTGATATATAAATAATTTCTAtt                                              >  2:1120316/1‑149 (MQ=255)
                                                                                                           ataaAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTaa                                          <  1:1025129/149‑1 (MQ=255)
                                                                                                              aatttAAAAAAACC‑AATAAATACAAGACAATTGGGGCCAAACTGCCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatt                                       <  2:1458115/146‑1 (MQ=255)
                                                                                                                 ttAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                                    >  2:1799586/1‑149 (MQ=255)
                                                                                                                   aaaaaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCTAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                  <  1:1003056/149‑1 (MQ=255)
                                                                                                                   aaaaaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                  <  2:314809/149‑1 (MQ=255)
                                                                                                                   aaaaaaaCA‑AATAAATACAAGACAAGTTGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGAATCTAACTGTTTGATATGTAAATTATTTCTAGTGTAAATTAAttt                                  >  2:1707726/1‑149 (MQ=255)
                                                                                                                    aaaaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTc                                 >  1:801883/1‑149 (MQ=255)
                                                                                                                      aaaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                               <  2:1439258/149‑1 (MQ=255)
                                                                                                                       aaaCA‑AATAAATACAAGACAATTGGGGCCAGACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAGAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTccca                              >  1:1053423/1‑149 (MQ=255)
                                                                                                                       aaaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAGATTAATTTcaca                              >  1:1054498/1‑149 (MQ=255)
                                                                                                                        aaCA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTCAAAAAAGTCAAAGAGCATCTCACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACAt                             >  1:965498/1‑149 (MQ=255)
                                                                                                                           a‑aataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                          >  2:1616947/1‑149 (MQ=255)
                                                                                                                               taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc                       <  2:852698/149‑1 (MQ=255)
                                                                                                                                 aataCAAGACAATTGGGGCCAAACTGTCCATATAATAAATAAGTTACGTCTTTTTTCTCAAGCATAAAACTATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCg                     >  2:66736/1‑149 (MQ=255)
                                                                                                                                  ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc                    <  1:89101/149‑1 (MQ=255)
                                                                                                                                   taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAATTTAATTTTACATCACCTCCGCt                   >  2:831967/1‑149 (MQ=255)
                                                                                                                                    aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCta                  <  1:773968/149‑1 (MQ=255)
                                                                                                                                      aaGACAACCGGGCCGAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata                <  1:1255618/149‑1 (MQ=255)
                                                                                                                                       aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTatat               <  2:1466919/149‑1 (MQ=255)
                                                                                                                                           aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaa           >  2:923217/1‑149 (MQ=255)
                                                                                                                                            aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaaa          <  1:91901/149‑1 (MQ=255)
                                                                                                                                            aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAACTTCACATCACCTCCGCTATATGTaaa          <  2:926257/149‑1 (MQ=255)
                                                                                                                                            aTTGAGGCCAAACTGGCTATATCATAAATAAGTTACTTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCCATATGTaaa          <  2:63932/149‑1 (MQ=255)
                                                                                                                                                 ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTTACATCACCTCCGCTATATGTAACGATaa     >  2:1864373/1‑149 (MQ=255)
                                                                                                                                                 ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTaa     >  2:13213/1‑149 (MQ=255)
                                                                                                                                                   ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTATATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg   >  2:399924/1‑149 (MQ=255)
                                                                                                                                                    cAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAACAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATTTAAAGCTAACGt  >  2:397091/1‑149 (MQ=255)
                                                                                                                                                    cAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGt  >  1:541628/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
TGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACA‑AATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGT  >  CP009273/4532359‑4532654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.