New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2871349 =	35 (1.700)	3 (0.160)	3/260	NT	8.6%	intergenic (+372/+579)	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease
	?	CP009273	2871404 =	31 (1.610)					intergenic (+427/+524)	iap/ygbF	aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease

CTGGCGCGGGGAACTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTT  >  CP009273/2871256‑2871553                                                                                                                                                     |                                                                                                                                                      ggataaaccgtcagctttataaacccggcgatacggaaactagagttccccgcgccagcggggataaaccggactcaccccgaaagagatgtcCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCtggctggc                                                                                                                                                      >  2:39492‑M1/94‑150 (MQ=255)      gcgGGGAACTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAAtct                                                                                                                                                 <  2:143790/150‑1 (MQ=255)              cTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCTAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCggg                                                                                                                                         <  1:177350/150‑1 (MQ=255)              cTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCggg                                                                                                                                         >  2:293494/1‑150 (MQ=255)              cTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCggg                                                                                                                                         >  1:358002/1‑150 (MQ=255)              cTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCGCTTTCggg                                                                                                                                         >  2:119331/1‑150 (MQ=255)               tCCCGGGGGATACTGTTTACGGGCCTGCGCCGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCgggg                                                                                                                                        <  1:336011/150‑1 (MQ=255)                   gggggATAATGTTTACGGTCATGCGTCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTATGCGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAg                                                                                                                                    <  2:83961/150‑1 (MQ=255)                   gggggATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAg                                                                                                                                    >  2:283028/1‑150 (MQ=255)                            tGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTa                                                                                                                           >  1:235645/1‑150 (MQ=255)                            gggtttcGGTCATGCGGCCCCCGGTTTGTCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCGGCCAGCTCCAGCAGCGGGTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTa                                                                                                                           <  1:85820/144‑1 (MQ=255)                                       aTGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCGCGCTGgc                                                                                                                >  1:258628/1‑150 (MQ=255)                                             gttccccgcgccagcggggataaaccggactcacccagaaagagattgcCAGCCCGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCCTTCGGGGGGAGTCCGGTTTCTCCCCGCTGGCGCgggg                                                                                                          <  1:222559‑M1/101‑1 (MQ=255)                                              ccccGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCTCGCTGGCGCGGGGa                                                                                                         <  2:244964/150‑1 (MQ=255)                                              ccccGGTTCATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGGAGCGGTTTATTCCCGCGGGCGCGGGGACCTCCAGCTCGGTGGCAAACTCCTACGGGGTGAGGCCGGGTTATCCCCGccgcgacggggc                                                                                                         >  1:75792/1‑139 (MQ=255)                                               cccGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGaa                                                                                                        >  1:156930/1‑150 (MQ=255)                                                ccccgcgccagcggggagaaaccggactccccccgaaggagattgccagccagcttgagttccccgcgccagcggggataaaccgctgctggagcgggctgGCAATCTCTTTCTGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAAc                                                                                                       <  1:222559‑M2/49‑1 (MQ=255)                                                      tATCCCCGCGGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGt                                                                                                 <  1:341762/150‑1 (MQ=255)                                                      tATCCCCCCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCTGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGt                                                                                                 <  1:329965/150‑1 (MQ=255)                                                         ccccGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTc                                                                                              >  1:61263/1‑150 (MQ=255)                                                         ccccGCGGGCGCGGGGAACTCTGGGCGGCTGGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTc                                                                                              <  2:127968/150‑1 (MQ=255)                                                            cgggggcggcgggACCTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCGCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGt                                                                                           <  2:185925/140‑1 (MQ=255)                                                            cGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGt                                                                                           <  1:283028/150‑1 (MQ=255)                                                                      gggAACGCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGAt                                                                                 <  2:190228/150‑1 (MQ=255)                                                                        gAACTCTGGGCGGCTTACCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTATATCCCCGATGGCGCGGGGAACCCTCGTTTCCGTATCGCCGGAttt                                                                               >  2:214210/1‑150 (MQ=255)                                                                               gggCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGc                                                                        >  1:283187/1‑150 (MQ=255)                                                                                 gcggcTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTACCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTGTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCtt                                                                      <  1:4089/150‑2 (MQ=255)                                                                                     cttgccttgcAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTTAGTCCGGTTTATCCCCGCGGGCGCGGGGAACTCTAGTTTCCGTAGCTCCGGATTTATAAAGCTGACgg                                                                  <  2:104904/150‑1 (MQ=255)                                                                                     cttcccttgcAGCCAGCTCCAGCAGCGCTTTATCCCCGCTGGCGCGGCGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGACTCCGTTTTATCCCCAATGGCGTGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACgg                                                                  <  2:140598/150‑1 (MQ=255)                                                                                         ccttgcAGCCAGCTCCAGCAGCGGTTTATCAACTCAGCGGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGCTTTa                                                              >  1:346256/1‑150 (MQ=255)                                                                                            gccagccagcttgagttccccgcgccagcggggataaaccgctgctggagctggctgGACATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCGCCGGGTTTATAAAGCTGACGGTTTATcc                                                           >  2:39492‑M2/58‑150 (MQ=255)                                                                                                  CAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTGATCCCCGCTGGCGCGGGGGACTCTAGTTTCCGTATCTCCCGATTTATAAAGCTGAGGGTCTATCCCCGCTg                                                     <  2:195335‑M1/150‑1 (MQ=255)                                                                                                   tcttcccgtaggggTTTTGCCCCGGTGGCGCGGGGAACTCCAGGTGGCTGGTAATATCTTTCTGGGTGTGGCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTgg                                                    <  1:81515/138‑1 (MQ=255)                                                                                                   agcttgagttccccgcgccagcggggataaaccgctgctggagctggctgGCAATCTCTTTCGGGGTGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTCGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTgg                                                    >  2:353047‑M2/51‑150 (MQ=255)                                                                                                        cagcagCGGTTTACCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCgg                                               <  2:16695/150‑1 (MQ=255)                                                                                                         agcagcGGTGTATCCCCGCTGGGGCGGGGAACGCAAGCTGGCTGGCAATCGCGTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTACGGTTATACAAAGCTGACGGTTTATCCCCGCTGGCGCggg                                              <  2:86796/150‑1 (MQ=255)                                                                                                                     tCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGCACTCCCAggc                                  >  1:174379/1‑150 (MQ=255)                                                                                                                                     gaactacagctggctgGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTa                  <  1:158225‑M2/134‑1 (MQ=255)                                                                                                                                               tggctgGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGGCGCGACGCGCCGGGTATGCGCGACTc        >  1:130918‑M2/7‑150 (MQ=255)                                                                                                                                                  ctgGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTGTCTCCGGATTTATAAAGCTGACGGTTTATCCCGGCTGGGGCGGGGGACTCGCAGGCGGCGACGCGCCGGGTACGCCCCAGTcgcg     >  1:69611‑M2/4‑150 (MQ=255)                                                                                                                                                  ctgGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCCGGGAACTCTAGTTCCCGTATCTCCGGGTTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGACCTCGCAGGCGGCGCCGCGCCGGGCAGCCGCGATTcgcg     >  1:69622‑M2/4‑150 (MQ=255)                                                                                                                                                   tgGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTAGCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGGTTCGCgg    >  2:158465‑M2/3‑150 (MQ=255)                                                                                                                                                    gGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGt   <  2:283187‑M2/149‑1 (MQ=255)                                                                                                                                                     gcAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGtt  <  2:26894/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CTGGCGCGGGGAACTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGGCGGCTTGCCTTGCAGCCAGCTCCAGCAGCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGCTGGCTGGCAATCTCTTTCGGGGTGAGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTT  >  CP009273/2871256‑2871553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.