New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4532507	60 (0.960)	13 (0.220)	11/274	5.5	20.0%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	CP009273	= 4532803	48 (0.820)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAC  >  CP009273/4532364‑4532652                                                                                                                                                |                                                                                                                                                  tataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTg                                                                                                                                              >  2:947311/1‑149 (MQ=255)  ataCCGCCAGTATTGCTGCTCGTTTTGCCGGATGATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGTTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAATTTCAAGACAATTGGGGCCAAACTGt                                                                                                                                             <  1:480154/149‑1 (MQ=255)    aCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                           >  2:856959/1‑149 (MQ=255)                 ctgctTGTTTTGCCGGATTATGGGAAAGAAATAATGTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGCTTGAGGGGTTAAGAAACCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                              <  2:404021/149‑1 (MQ=255)                 ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCctaaataa                                                                                                                              >  1:44337/1‑149 (MQ=255)                 ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                              <  1:692213/149‑1 (MQ=255)                 ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAATGTCCATATCattaataa                                                                                                                              >  1:109789/1‑149 (MQ=255)                  ttctagTTTTGCCGGATTATGAGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGATAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg                                                                                                                             <  2:808310/144‑1 (MQ=255)                             ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                                  >  2:679010/1‑149 (MQ=255)                             ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                                  >  1:986154/1‑149 (MQ=255)                             ccGGATTAAGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATCGGGGCCAAACTGTCCCTATCATAAATAAGTTACATAtttt                                                                                                                  >  1:248751/1‑149 (MQ=255)                               ggATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTAAGTAtttttt                                                                                                                >  1:129311/1‑149 (MQ=255)                                       ggAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCa                                                                                                        >  1:480854/1‑149 (MQ=255)                                           agaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa                                                                                                    >  2:418797/1‑149 (MQ=255)                                             aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAATAATCAATGGAATACAAGACACTTGGGGCCAAACTGTCCATATCATAAATAAGTTACATATTTTTTATCAAGCATaaaaa                                                                                                  >  1:253/1‑149 (MQ=255)                                               ataatCACAAAAACAAAAAAATAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata                                                                                                <  1:634440/149‑1 (MQ=255)                                                    ctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaa                                                                                           <  2:599908/149‑1 (MQ=255)                                                     tcAAAAACTAAAAATTAAAAAGAGAAGAGGTTTGATGTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATCCAAGACAATTGGGGCCAAACTGTCTATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa                                                                                          <  1:553280/149‑1 (MQ=255)                                                          aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                     <  2:9978/149‑1 (MQ=255)                                                            cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGAATTTTTTCTCAAGCATAAAAATATTAAAAAACGACa                                                                                   >  2:1030994/1‑149 (MQ=255)                                                             gAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTTAAGCATAAAAATATTATAAAACGACaa                                                                                  >  1:621576/1‑149 (MQ=255)                                                                    tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTATCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                           >  2:129047/1‑149 (MQ=255)                                                                     aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                                          <  2:393437/149‑1 (MQ=255)                                                                     aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                                          <  1:856959/149‑1 (MQ=255)                                                                      aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                         >  2:274554/1‑149 (MQ=255)                                                                        aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                                       <  2:519558/149‑1 (MQ=255)                                                                           agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAAGAACAAAAGCATCTAACTg                                                                    >  1:537107/1‑149 (MQ=255)                                                                            gaagagGATTGATTTAACTTAATGATAATAAAATTAAAAAAACAAATAAATACAAGACAATTGGAGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACCGt                                                                   >  1:288674/1‑149 (MQ=255)                                                                              agagtattGATTTAACTTATCGATAATAAAGTTAAAAAAACAAATAAATACAGGACAATTGGGGCCAAACTGTCCATATCATAAAAAAGTTACGTATTCTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                 <  1:788742/143‑1 (MQ=255)                                                                              agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCAGATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                 <  1:390116/149‑1 (MQ=255)                                                                                  gTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGata                                                             >  1:863917/1‑149 (MQ=255)                                                                                       cttaaaactATTGAGAATAAATATAAAAAAAAAAATAATGACAAGACAATTGGGGCCAAACACTCCATATCATAAATAACTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaa                                                        <  1:611498/141‑1 (MQ=255)                                                                                         ttAACTTATTGATAATAAATTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                      <  1:97161/149‑1 (MQ=255)                                                                                              ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                 <  2:877119/149‑1 (MQ=255)                                                                                              ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                 >  2:950692/1‑149 (MQ=255)                                                                                               tATTGATAATAAAGTTAAAAAAAAAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATGTTGTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTc                                                <  2:505116/149‑1 (MQ=255)                                                                                                 ttGATAATAAAGTTAAAAAAACAAATAAATACAAGATAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGCATTTTTTCTCAAGCTTAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGTTATGTAAATTATTTCTa                                              <  1:796920/149‑1 (MQ=255)                                                                                                       agaaattcaaaaacaCAAATAAATTCAAGCTAATTGGTGCCAAACTGTCCATACCATAAATAATTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTTTaa                                        <  1:949809/141‑1 (MQ=255)                                                                                                        taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCAAAAATAAGTAACGAATTTTTTCACAAGCATAAAAAAAATAAAAAACGACAAAAAGCATCTAACTGTTAGAAATGTAAATTATTTCTATTGTaaa                                       >  2:355277/1‑149 (MQ=255)                                                                                                               aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTCATGCTTTAAAATATTAAAAAACGACAAAAAGCATCTGACTGTTTGATATGTTAATTATTTCTTTTTTCAATTAtttt                                >  1:789534/1‑149 (MQ=255)                                                                                                                aaaaaaCAAATAAATCCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTc                               <  1:235273/149‑1 (MQ=255)                                                                                                                 aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTACTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATTTAACCGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcc                              >  1:57399/1‑148 (MQ=255)                                                                                                                 aaaaaCAAATAAATACAAGACAATTAGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATATAAATTATTTCAATAGTAAATTAATTTca                              >  1:483928/1‑149 (MQ=255)                                                                                                                  aaaaCAAATAAATACAGGACTATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                             <  1:236385/149‑1 (MQ=255)                                                                                                                     aCAAATAAATCCAAGACAATTGGGGCCAAATTGTCCATATAATAAATAAGTTTAGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGCTTAAATACCAAAGTATTTCTATTGTAAATTAATTTCACATc                          <  2:248751/149‑1 (MQ=255)                                                                                                                            aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTCTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCg                   <  2:302239/149‑1 (MQ=255)                                                                                                                             ataCAAGACAATTGGGGCCAAATTGTCCATATCATCTATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTATCTGTTTGATATGTAAATTATTTCTATTTTAAATTAATTTCACATCACCTCCGc                  <  1:567069/149‑1 (MQ=255)                                                                                                                             acaCAAGACAATTGGGGCCAAACTGTCCATATCATAACTAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc                  <  2:621576/147‑1 (MQ=255)                                                                                                                                 aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata              >  1:31799/1‑149 (MQ=255)                                                                                                                                 aaGACAATTATGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAACTTAATTTCACATCACCCCCGccaaa              >  1:178315/1‑145 (MQ=255)                                                                                                                                 aaGACAATGGGGGCCCAACTGTCCAACTCATAAATAAGTTACGTATTTTTTCTCAATCATAAAAATATTAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtata              <  1:593969/149‑1 (MQ=255)                                                                                                                                  aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCACTatat             >  2:992657/1‑149 (MQ=255)                                                                                                                                   gACAATTGGGGCCAAACTGTCCATACCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATg            >  2:615881/1‑149 (MQ=255)                                                                                                                                     cAACTGGGGCCAAACTGTCCATTTCATAAAGAAGTTACGTATTTTTTCTCAAGAATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTa          <  1:299776/149‑1 (MQ=255)                                                                                                                                           gggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatta                                    >  1:552/1‑117 (MQ=255)                                                                                                                                           gggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaatta                                    <  2:552/117‑1 (MQ=255)                                                                                                                                            ggCCAAACTGTCCATATCATAAATAAGTTACGTAGTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCACCATACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTaa   <  1:410504/149‑1 (MQ=255)                                                                                                                                             gCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc  <  1:996028/149‑1 (MQ=255)                                                                                                                                             gCCAAACTGTCCATATCATAAATAAGTAACGTATTTTTTCTTAAGTATAAAGATATTAAAAAAAGACAAAACGAATCTAACTGTTTGATAGTTAAATTATTCCAATTGTAAGTAATTTTCGGTTCACTCCGGCTATATGTAGAGCTGAc  >  1:491586/1‑149 (MQ=255)                                                                                                                                             gCCAAAATGTACATATCATAAATAAGTTACGTATTTTTTGTCAGTCAGAAAAAGACTAAATAACGACAGAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc  <  1:368983/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                  TATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAC  >  CP009273/4532364‑4532652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.