New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 225231	49 (0.780)	13 (0.220)	6/280	7.9	21.7%	intergenic (+82/‑12)	rrlH/rrfH	23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
	?	CP009273	2719583 =	NA (NA)					intergenic (‑36/+57)	rrfG/rrlG	5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

GCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAA  >  CP009273/225084‑225377                                                                                                                                                    |                                                                                                                                                   gCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACACCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa                                                                                                                                                   >  2:41856/1‑149 (MQ=17)      gtgtgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAAGGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACa                                                                                                                                              >  1:270700/1‑149 (MQ=17)         tgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGTAGAAGCGGTCTGATAAAACAGaa                                                                                                                                           >  1:649023/1‑149 (MQ=17)            aaGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACATTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAttt                                                                                                                                        >  1:958940/1‑149 (MQ=17)                     caTGTGTTGAGCTAAGCTGTACTAATTAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGTATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcgg                                                                                                                               <  1:658801/148‑1 (MQ=11)                          gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTa                                                                                                                          <  2:886681/149‑1 (MQ=34)                          gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTa                                                                                                                          <  2:580673/149‑1 (MQ=34)                          gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAAAAGCGGTCTGATAAAAAAAAATTTGCCTAGCGTCGGTa                                                                                                                          >  1:457154/1‑149 (MQ=11)                           ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACATTACAACGACGAAGCTGTTTTGGCGGATTGAGAGAAGAGTTTCAGCCTGATACAGATTAAAGCAGAACGCAGAAGGGGTCTGATAAAACAGAATTTGCCTGGCGGCCGtcg                                                                                                                         >  1:30122/1‑147 (MQ=11)                            tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAATACAGAATTTGCCTGGCGGCCGTAgc                                                                                                                        <  2:516116/149‑1 (MQ=21)                             gAGCTAACCGGTACAAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgcg                                                                                                                       <  1:97272/149‑1 (MQ=21)                              aGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgcgc                                                                                                                      <  1:595651/149‑1 (MQ=34)                               gCTACCCGGGACTAATGAGCCGTGAGGCCTAACATTACACCGACGGAGCTGTTTTCGCGAAAAGAGAGGAGAGTTTCAGCCTGATGCAGGGGAAAGTTGGACGGTGGAGGGGGCTGATAAAACAGAATTTGCCTGGCGGCCGTAGcgcg                                                                                                                     <  1:602475/149‑1 (MQ=2)                                 tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggt                                                                                                                   >  2:236932/1‑149 (MQ=34)                                    ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtggt                                                                                                                <  1:355220/149‑1 (MQ=34)                                     cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                                                                                                               <  2:326719/149‑1 (MQ=34)                                         aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc                                                                                                           <  2:229692/149‑1 (MQ=34)                                           tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCt                                                                                                         >  1:587172/1‑149 (MQ=34)                                             aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGa                                                                                                       >  1:550150/1‑149 (MQ=34)                                              tGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCCCCTGAc                                                                                                      >  1:490281/1‑149 (MQ=21)                                                 aCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGCAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCAGTCTGATAAAACAGAATTTACCTGGCGGCCGTAGCGCGGTGGTCCCCCCTGAcccc                                                                                                   >  2:72141/1‑149 (MQ=255)                                                     tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAACCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCGCCTGACCCCATGc                                                                                               >  2:17000/1‑149 (MQ=21)                                                     ggAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc                                                                                               <  1:384592/148‑1 (MQ=21)                                                       aGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCg                                                                                             <  2:822541/149‑1 (MQ=34)                                                        ggCTTAACCTTACATCGCCGAAGCTATTTTGGCAGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGGAGCGGCCTGATAAGACAGAATTTGCCTGGCGGCCGTACCGCGGTGGTCCCACCTGACCCCATGCCGa                                                                                            <  2:630920/149‑1 (MQ=11)                                                        ggCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGa                                                                                            >  1:242141/1‑149 (MQ=34)                                                         gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa                                                                                           <  2:116546/149‑1 (MQ=34)                                                          cTTAACCTTACAACGCCGAAGCTGTGTTGGCGGATTGAGAGAAGATTTTCAGCATGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAAc                                                                                          >  1:552559/1‑149 (MQ=21)                                                                cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGCCATGGATTAAAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                    <  1:989091/149‑1 (MQ=11)                                                                cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                                    >  1:70912/1‑149 (MQ=34)                                                                    cAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGa                                                                                <  2:520421/149‑1 (MQ=34)                                                                      aCGCCGAAGCTGTTTTGGCGGATTGAGAGAATATTTTCAGCCTGATATCGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                                                                              <  2:649023/149‑1 (MQ=255)                                                                        gCCGAAGCTGTTTTGGCGGGTTGAGAGAAGATTTTCAGCCTGGTAACTTGTAAATCAATTATCTAATACGGCCTGATAAAACAGAATTTACCTAGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATACAGAACTCAGAAATGAAAcc                                                                            >  2:244814/1‑148 (MQ=2)                                                                         ccGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCACAAGCGAAACGc                                                                           >  2:507967/1‑149 (MQ=21)                                                                          cGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGcc                                                                          <  1:409099/149‑1 (MQ=34)                                                                           gAAGCTGTTTTGGCTGATTGAGAGAATATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCg                                                                         <  2:694897/149‑1 (MQ=21)                                                                               ccgTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCCCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgc                                                                     <  1:156042/147‑1 (MQ=17)                                                                               cTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgc                                                                     <  2:633525/149‑1 (MQ=32)                                                                                tGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGACGTGAAACGCCgacgca                                                                    >  1:102819/1‑144 (MQ=12)                                                                                tGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcg                                                                    >  1:252169/1‑149 (MQ=32)                                                                                  ttttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAACCAGAATTTACCTGGCGGCCGAAGCGCAGTGGTCCCACCTGACCCCATACCGAACTAAGCAGTGAAACGCCGTAGcccc                                                                  >  2:398558/1‑149 (MQ=11)                                                                                         ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTa                                                           >  1:142292/1‑149 (MQ=32)                                                                                                gagacggtgttCAGCCTGAGACAGATAAACTCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg                                                    <  1:669314/140‑1 (MQ=1)                                                                                                                                           gCGGTCTGATAAACCAGAATTTGCCTGGCGGCCGTATCGTGGTGGTTCCACCTGACCCCTTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTaa         <  1:110582/149‑1 (MQ=11)                                                                                                                                            cGGTGTGACAAAACAGAATTTGCCTGGCGGCCGTAGCGCGCTGGTCACACCTCACCCCATTCCGAACTCAGAAGTGAAACGCCGTAGCGTCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTATGGAACTGCCAGGCATCAAATTAAg        <  1:16279/149‑1 (MQ=11)                                                                                                                                             ggTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCACATTAAGc       >  1:235732/1‑149 (MQ=17)                                                                                                                                             ggTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGAATCAAATTaaac       >  1:235760/1‑147 (MQ=11)                                                                                                                                               tCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTaagaag     >  1:497787/1‑149 (MQ=14)                                                                                                                                                  gATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCTCTTGTCCCCTTGCCGTACTCAGAAGTGAATCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTaa  <  2:316512/149‑1 (MQ=11)                                                                                                                                                    |                                                                                                                                                   GCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAA  >  CP009273/225084‑225377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.