New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1973068	1 (0.020)	68 (1.090)	56/292	0.1	98.6%	intergenic (‑614/‑166)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

CCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576643‑3576932                                                                                                                                                  |                                                                                                                                                 ccTCTCGATTCCAGAACCTTCAGTTAAACACCTTTTTGCCGTAAATGAATTTTATAGAAATAATAATGATTTCATAAACCCTGATCTACAAGAACGGTAAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAtgtg                                                                                                                                               >  2:6191/1‑149 (MQ=255)   tctcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAt                                                                                                                                             <  2:439066/149‑1 (MQ=255)       gATTCCAGAACCTTCAGTTAAAAACCTTTATGCCGTAAATGCAGATTATTGAAATAAGGATGATTTCTTAGAGCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTGCAGTAGTTACTT‑TGACATTAAGGGAAGtgctgc                                                                                                                                        >  1:316493/1‑149 (MQ=255)         tcccaaccccatCAGTTAAAAACCTTTTCGCCGTAAATGAATTTTATAGAAATAATGATGATTCCATAACCCCTGATCTCCTCGGCCCGTTAGTGATCGCGGATTATAGCATTTCTATACTTACTTATGACATTAAACGTGATGCTAcc                                                                                                                                       <  1:903386/138‑1 (MQ=255)           ccAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATCTCAATATTTACTTATGACATTAAAGGTGATGCTGCCaa                                                                                                                                     <  1:321599/149‑1 (MQ=255)           ccAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCAGTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCaa                                                                                                                                     <  2:330624/149‑1 (MQ=255)           ccAGAACCTTCAGTGAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCaa                                                                                                                                     <  2:420052/149‑1 (MQ=255)            cAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAAc                                                                                                                                    >  2:887485/1‑149 (MQ=255)                aCCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTAc                                                                                                                                <  1:972203/149‑1 (MQ=255)                 ccTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACt                                                                                                                               <  2:684506/149‑1 (MQ=255)                      aGTTAAAATCCTTTCTGCCGTAAATGAATTTTATAGTAATAACGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACACTAAAGGTGATGCTGCCAACTTACTGAttt                                                                                                                          <  2:728535/149‑1 (MQ=255)                        ttAAAATCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGCTTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAg                                                                                                                        <  2:491201/149‑1 (MQ=255)                        ttAAAAACCTTTTTGTCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGATATTAAAGGTGATGCTGCCAACTTACTGATTTAg                                                                                                                        <  1:92894/149‑1 (MQ=255)                         tAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgt                                                                                                                       <  2:549546/149‑1 (MQ=255)                              aCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatg                                                                                                                  >  2:511937/1‑149 (MQ=255)                                cTTTTTGCCGTAAATGAATGTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTGCAATATTTACTTATGACATTAAAGGTAATGCTGCCAACTTACTGAATTAGTGTatgat                                                                                                                >  1:516101/1‑149 (MQ=255)                                 tttttGCCGTAAATTAATTTTATAGAAATAATAATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatgatg                                                                                                               <  1:580337/149‑1 (MQ=255)                                 tttttGCCGTAAATGAATTTTATAGAAATCATGATGATTTCATAAACACTGCTCTACAAGAACGGCTAGTGATCGGGGATTATAGAATTTCAATACTTACTTATGAACTTAAAGGTGATGCTGCCAACTTACTACTTTAGTGTatgatg                                                                                                               >  1:361240/1‑149 (MQ=255)                                 tttttGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGTGGATTATAGTATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatgatg                                                                                                               <  2:4239/149‑1 (MQ=255)                                        cGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGAGTATGATGGTGtttt                                                                                                        >  2:945295/1‑149 (MQ=255)                                          tAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTg                                                                                                      <  1:408456/149‑1 (MQ=255)                                          tAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTAAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTg                                                                                                      >  1:836746/1‑149 (MQ=255)                                            aaTGAATTTTATAGAAATAATGATTATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGTCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAg                                                                                                    <  1:32974/149‑1 (MQ=255)                                            aaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAg                                                                                                    <  1:747576/149‑1 (MQ=255)                                            aaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAg                                                                                                    <  1:795321/149‑1 (MQ=255)                                                        aGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACAATAAAGGAGATGCTGCAAACTTACTGATTTAGTGAATGATGGTGTTTTTGAGGTGCTACAGTgg                                                                                        >  2:427435/1‑149 (MQ=38)                                                         gAAATAATTATGATTTCATAAACCCTGATCTACAGGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGGTGGGGTTAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGc                                                                                       <  2:457889/149‑1 (MQ=38)                                                         gAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGc                                                                                       <  2:326678/149‑1 (MQ=255)                                                         gAAATAATGATGATTTCATAAACCCGGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTTAATATTTACTTATGACAGTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGc                                                                                       <  2:326716/149‑1 (MQ=255)                                                           aataatGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGTGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCtt                                                                                     <  2:369327/149‑1 (MQ=255)                                                                tgatgaTTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTTTTTTTGAGGTGCTCCAGTGGCTTCTGtt                                                                                <  2:569430/149‑1 (MQ=255)                                                                tgatgaTTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGtt                                                                                >  2:842387/1‑149 (MQ=255)                                                                 gctgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGttt                                                                               <  1:109244/147‑1 (MQ=255)                                                                 gatgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGttt                                                                               >  1:845907/1‑149 (MQ=255)                                                                   tgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCt                                                                             <  2:85846/149‑1 (MQ=255)                                                                    gatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCACCTTACTGCTTTAGTGTATGATGGTGTTTTTGAGGTGTTCCAGTGGCTTCTGTTTTTa                                                                            >  1:677400/1‑149 (MQ=255)                                                                      tttCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGAGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATc                                                                          >  1:806490/1‑149 (MQ=255)                                                                       ttCATAAACCCTGATCTACAAGAACTGTTAGTGATCGGTGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACGTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCa                                                                         <  1:83717/149‑1 (MQ=255)                                                                        tCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGATGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAg                                                                        >  2:376805/1‑149 (MQ=255)                                                                                      ttACAAGAACGGTTACTGATCGGGGATTATAGCATTTCAATATTTACTTATGATATTAAAGGTGATGCTGCCAACTTACGGATGTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGtt                                                          <  1:153994/148‑1 (MQ=255)                                                                                      cTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGtt                                                          <  2:766753/149‑1 (MQ=255)                                                                                       tACAAGAACTGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTc                                                         <  2:210379/149‑1 (MQ=255)                                                                                         cAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGAGGTTTTTGCGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAg                                                       >  1:604602/1‑149 (MQ=255)                                                                                          aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAACTGTCACTCCTGTTCAGc                                                      >  2:1035656/1‑149 (MQ=255)                                                                                                  ttAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACg                                              >  2:484552/1‑149 (MQ=255)                                                                                                   tAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACgg                                             <  1:484552/149‑1 (MQ=255)                                                                                                    aGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACggg                                            <  1:753636/149‑1 (MQ=255)                                                                                                         tCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtggt                                       >  2:519577/1‑149 (MQ=255)                                                                                                           ggggATTATAGCATTTCAATATTTACTTATGACTTTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                                     <  2:273592/149‑1 (MQ=255)                                                                                                           ggggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                                     >  1:859436/1‑149 (MQ=255)                                                                                                           ggggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                                     <  2:733401/149‑1 (MQ=255)                                                                                                                      cATTTCAATTGTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaa                          <  2:361240/149‑1 (MQ=255)                                                                                                                       aTTTCAATATTTACTTATTACATTAAAGGTGATTCTGCTAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGGGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaaa                         <  2:722733/149‑1 (MQ=255)                                                                                                                         ttCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTAAGATAATGTGGGAGTGGCGCGTAAAGGCCAAAGc                       >  2:958743/1‑149 (MQ=17)                                                                                                                          tCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCa                      <  2:1022479/149‑1 (MQ=255)                                                                                                                          tCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTCGGTAACGGCAAAAGCa                      >  1:247587/1‑149 (MQ=255)                                                                                                                           cAATTTTTTCTTATCAGATTTAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCAATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAc                     <  1:670258/149‑1 (MQ=11)                                                                                                                              tatTGACTAACGACATGAAGGGTGATTCAGTTAAGTCAATGGTTTAGTGAAAGATGCTGTATTTGAGGGGCTACAGTGGCATCTGTCTGTATCAGCGGTCGCACCGGTGCAGGTACTGACGGGGTGGTGCGTAACGCCACCAGCGccgg                  >  1:379483/1‑148 (MQ=2)                                                                                                                                   aCTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCTGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCACAAGCACCGCCGGag             <  1:326543/149‑2 (MQ=255)                                                                                                                                     ttATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAt           >  2:387677/1‑149 (MQ=39)                                                                                                                                           cATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGTTTCTCCAGTGGCTTCTATTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAgcgc     >  1:87604/1‑149 (MQ=255)                                                                                                                                            aTTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTAGCGGTGATCCAGTGTATGGTATTTCTATCAGCTGTCCCTCCTGTTTGGCTACTGACGGGGTGGAGCGTAACGGCACAAGAACCGCCGGACATCGCCGCt    >  1:656237/1‑149 (MQ=11)                                                                                                                                            aTTAAAGGTGATGCTGCCAACTTACTGATTTAGAGTATGATGGTGATTTTGAGGTGCTCCAGTGGATTCTGTTTCTATCAGCTGTCCCTCCTGGGCAGCTACTGGCGGGGTGGTGCGTAACGGCAAGAGCACCGCCGGCCCTCAGCGCt    >  1:656342/1‑149 (MQ=11)                                                                                                                                             ttAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCACCGCTa   >  1:354082/1‑149 (MQ=17)                                                                                                                                              tAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAt  <  1:842387/149‑1 (MQ=32)                                                                                                                                                  |                                                                                                                                                 CCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAT  >  CP009273/3576643‑3576932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.