| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1046001 | 22 (0.770) | 14 (0.490) | 13/270 | NT | 40.6% | intergenic (+15/+418) | insB1/cspH | IS1 transposase B/stress protein, member of the CspA‑family |
| ? | CP009273 | 1973060 = | 19 (0.660) | intergenic (‑606/‑174) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein | |||||
AATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCC > CP009273/1045854‑1046142 | aaTTGAGCGGTATAACCTGAATCTGAGGCAGCACCTCGTTCGGCGGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGGGTCATTACCg > 1:258364/1‑149 (MQ=11) aTTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGTCATTATCTGAACAGAAAACACTATCAATAAGTTGGAGTCATTACCGa < 1:339784/149‑1 (MQ=17) aTTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGa > 1:300746/1‑149 (MQ=32) ataACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctcttt > 2:88349‑M1/1‑137 (MQ=255) aaCCTGAAGCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGc < 1:306662/149‑1 (MQ=38) ccTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTTAGATTGGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt > 1:280672/1‑149 (MQ=255) cTGAATCTGAAGCAGCACCTGGCACGGCTGGGACGGAAGTCGCAGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAGGTGGGAGCCAGGACCctatttcctta > 2:98877‑M1/1‑132 (MQ=255) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataatt < 2:344935‑M1/143‑17 (MQ=255) aCGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg < 1:496420/149‑1 (MQ=255) cTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAACTCTTAAGCGATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtata < 1:385011/149‑1 (MQ=18) ttggACGGAATTCGCTGTCGTTCTCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 2:243723/141‑1 (MQ=255) gggACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAc < 1:163382/149‑1 (MQ=255) tGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataattaaatttgaaattatatgatcaacgggagtgattgatta > 2:464262‑M1/1‑89 (MQ=255) tGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCACAATACGTACGCTTGAGATCAGGATTTTCTACTTTGAGTATAACCTCCtttt > 2:82346/1‑141 (MQ=255) tCGTTCTCAAAATCTGGGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGa < 2:405569/143‑1 (MQ=255) cGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc < 1:223605/149‑1 (MQ=255) ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatccccgggagtgattgattaattatctttac > 1:238775‑M1/1‑84 (MQ=255) tctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattgattaattatc < 2:12412‑M1/143‑61 (MQ=255) ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCttt < 1:494097/149‑1 (MQ=255) cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGCGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc < 2:227035/143‑1 (MQ=255) cAAAATAAGTAGAGCGCCATGACAAAGGGATCGTGCTTTAGCTGTACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAGTTTCTACTTTGAGTATAACATCCTTAGGAAATCTcc > 2:397934/1‑143 (MQ=21) aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCt > 2:242013/1‑143 (MQ=255) aaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCa < 1:429933/149‑1 (MQ=255) gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattgattaattatctttactaataatcagac < 1:517411‑M1/149‑78 (MQ=255) cATGACCAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACGGACAATACGTCAGCTTGAGATCAGGATTGTCTACTTTGAGTATAGCCTCCTTGTGCCGGCTCCCTTTCCTCGTCCCGCtc > 2:449285/1‑142 (MQ=21) tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATAAGTACGCTTGAGATCAGGATTGTCTACTGTGAGTATAACATCCTTGTGAAATCTCCCTTTCATCATACCGCTTGCACtata > 1:391606/1‑149 (MQ=255) gTCATCGGGCATTATCTGAACATAAAACACCATCAATAAGTGGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattgattaattatctttactaataatcagactaatatttacctgtttga < 1:98652‑M1/149‑96 (MQ=255) cGGGCATTATCTGAACATAAAACACTATCAATAAGATGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATAACGCTTGCACTATATACTga > 2:292944/1‑142 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattgattaattatctttactaataatcagactaatatttacctgtttgaccgagt < 1:262817‑M1/149‑102 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattgattaattatctttactaataatcagactaatatttacctgtttgaccgagt < 1:466890‑M1/149‑102 (MQ=255) gCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattaattaattatatttactaataatcagactaatatttacctatttgacc > 2:232513‑M1/1‑46 (MQ=255) aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTa < 2:295020/143‑1 (MQ=255) aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAg > 1:160491/1‑149 (MQ=255) aTTATCTGAACATAAAACACGATCAATAGGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTCTAACATCCTTGTGAAACCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAg < 1:352749/149‑1 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattgattaattatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttc < 1:216607‑M1/149‑119 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAgg > 2:397251/1‑143 (MQ=255) aTCAATAAGTTGGAGTCATTACCctattttcttataattacatttgaaattatatgatcaccgggagtgattgattaattatctttactaataatcagactaatatttacctgtttgaccgagttgggcttgcgtcgtttctc > 2:202770‑M1/1‑23 (MQ=255) taattgggactcatTACCctattttcttataattacacttcaaattatatgatcaccggtagttattgattaattatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccatta < 2:88884‑M1/137‑126 (MQ=255) gTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTaa < 2:115418/143‑1 (MQ=255) ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATccc > 2:176848/1‑143 (MQ=255) | AATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCC > CP009273/1045854‑1046142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |