| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1401356 | 30 (1.040) | 120 (4.180) | 83/270 | NT | 80.0% | coding (697/1233 nt) | ydaM | diguanylate cyclase, csgD regulator |
| ? | CP009273 | = 2283592 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
Only 100 of 172 total aligned reads displayed.
CGATGGCGAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTTTATGAACAAAATTCAAAGGTTTATGACCACCGGGTAAATGCGAGATTTCATGCATGATAGGCATGACGCGACGC > CP009273/1401209‑1401504 | cGATGGCTAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCTGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAg < 1:363127‑M1/149‑2 (MQ=255) ggCGAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATGTCATGCACAATACATAAggagg > 1:137579‑M1/1‑144 (MQ=255) gCGAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATaa < 2:179456/143‑1 (MQ=255) gCGAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaagg > 1:89034‑M1/1‑143 (MQ=255) cGAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAc < 2:297646/143‑1 (MQ=255) cGAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATACGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggt > 1:75743‑M1/1‑142 (MQ=255) gaagctgcattTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcg < 1:112579‑M1/146‑11 (MQ=255) gaTGCTGCATTTGGCCTGGTTCCTTAATGTGATAGAACTGTCGCCGATTCAGTGATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcg > 1:291776‑M1/1‑139 (MQ=255) ctgcATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtg > 2:232824‑M1/1‑135 (MQ=255) tgcATTTGGCTTTGTTCCGTAATGTGATACAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCCTGGTGAGCAGCATTTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCCCAATACATAAggaaggtgcgaacaa < 1:124830‑M1/149‑16 (MQ=255) tgcATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgc > 2:223525‑M1/1‑134 (MQ=255) ggcaTTTGGCCTGGTTCCGTAATTTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgc < 2:442902‑M1/142‑10 (MQ=255) gcATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcg < 2:71286‑M1/143‑11 (MQ=255) ttGGCCTGGTTCCGTAATGTGATAAAACTGACGCCGATTCAGTAATCCGGTCATCGCGTCACGATTTGCAGCATGTTCAAGCTGCTCCCACAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtgcc > 1:232580‑M1/1‑129 (MQ=255) tGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGCGAGCAGCATGTTCCCGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaa < 2:341981‑M1/143‑16 (MQ=255) tGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCCAAGCGTCATGTTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccc > 2:78543‑M1/1‑123 (MQ=255) gTTCCGTAATGTGATAAGACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctg < 2:7623‑M1/143‑23 (MQ=255) gTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatga < 1:444005‑M1/149‑29 (MQ=255) gtcCGTAATGTGACAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctga < 2:187325‑M1/142‑24 (MQ=255) tgcGTATTGTTAGAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTTATGGTGATCAGCATGTTCCCGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTc < 2:167635/141‑1 (MQ=255) ccGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCa < 2:452375/143‑1 (MQ=255) cGTAATGTGATAAAACTGTCGCCGATCCAGTAATCCGGTCAGCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatat < 2:20435‑M1/143‑27 (MQ=255) tAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatga > 2:269654‑M1/1‑115 (MQ=255) ccgatctataaaactGTCGCCGATTCAGTAATCCGTTCATCGCGTCATAGTTTGCATCATATTCCAGCTTCTCCTCCAGCCTTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatga < 2:395906‑M1/136‑29 (MQ=255) aTGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgaga < 2:351878‑M1/143‑31 (MQ=255) tgtgATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCa < 1:435616/149‑1 (MQ=255) tgATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtacctgatatgagatcatgtttg > 1:189056‑M1/1‑110 (MQ=255) gATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt > 1:420739‑M1/1‑109 (MQ=255) gATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcat < 2:117631‑M1/143‑35 (MQ=255) aTAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGTATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATCAggaaggtgcgaacaagtccctgatatgagatcatg > 2:129209‑M1/1‑108 (MQ=255) aTAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc > 1:482048‑M1/1‑108 (MQ=255) aaaCTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgttt < 2:91695‑M1/143‑39 (MQ=255) aCTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCAGGTTCTAGTTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctcatatgagatcatgtttgtcatctg < 1:391318‑M1/149‑47 (MQ=255) aCTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCACGTTCTAGGTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg < 1:391441‑M1/149‑47 (MQ=255) gtcgctgttgcatgaatccggtcatcgcgtCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGTCGTTTTTGCTTAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat < 2:148019‑M1/129‑44 (MQ=255) tccGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTGATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGa < 1:300416/148‑1 (MQ=255) cGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGTTTTGTTTTTTCATGCACAATACATAACATGAGCTTGTCGTCTTGAATTTCGCTCGGGCGGGTGTACGTCCGcac > 2:434967/1‑143 (MQ=255) gATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag > 1:449646‑M1/1‑94 (MQ=255) aGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata > 2:180379‑M1/1‑89 (MQ=255) aGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGa < 1:397735/149‑1 (MQ=255) gTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCGGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag < 2:97191‑M1/143‑56 (MQ=255) gTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCACCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg < 1:159213‑M1/149‑62 (MQ=255) ggTCAGCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACAGAAgtaaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccatagaacaggg < 2:144451‑M1/143‑63 (MQ=255) aTCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga < 1:468810‑M1/149‑73 (MQ=255) gTCATGGTGAGCAGCGTGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACACTACATAAggaaggtgcgaacaagtccctgataagagatcatgtttgtcatctggagccatagaacagggttcatcatg > 2:296043‑M1/1‑72 (MQ=255) tCATGGTGATCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga < 2:67582‑M1/143‑73 (MQ=255) cATGGGGAGCAGCATGTTTCAGCTGCGCCCCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca < 1:202035‑M1/149‑80 (MQ=255) aTGGGGGGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa < 1:27283‑M1/149‑81 (MQ=255) gTGAGCAGCATGTTCCAGCTGCGCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTTTAt < 2:110338/143‑1 (MQ=255) tGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtgcatcatgagtcatc > 2:250324‑M1/1‑65 (MQ=255) tGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCCCAGTCATACCATGCACACTACATAAggaaggtgcgcacaagcccctgatatgagatcacgtttgtcatctggagccatagaaccggtgtcatcatgcgtcatc > 2:136034‑M1/1‑65 (MQ=255) tGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTCTTTGCACAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactta < 1:492559‑M1/149‑85 (MQ=255) agcagcATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc < 1:49648‑M1/149‑87 (MQ=255) cagcaTGTTCCAGCTGCTCCTCCAGCCGTTTTTGCGCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGAGGAGTCGAACCATCGTGCAGTTTAGGACGAAGATTc > 1:34831/1‑149 (MQ=255) cagcaTGTTCCAGCTGCTCCTCCAGACGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt > 1:315914‑M1/1‑61 (MQ=255) gcaTGCTCCAGCTGCCCCGCCAGCCGTTTTTGCTCAGTAATATCATGCACAATCCATAAggaaggtgcgaacaagcccctgatatgacatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg < 1:455615‑M1/149‑91 (MQ=255) caTGTTCCAGCTTCTCCTCCATCCTGTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcac < 1:341888‑M1/149‑92 (MQ=255) caTGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc < 1:249567‑M1/149‑92 (MQ=255) tGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACCGTACCTCAggaacgtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcgtgagtcatccacttacct > 2:193431‑M1/1‑56 (MQ=255) tGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATCCATAAggaaggtgggaacaagtccctgatatgagatcatgtttgtcacctggcgccatagaacgggcttcatcatgcggcatcaacttcctt > 2:48529‑M1/1‑56 (MQ=255) gTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga > 1:409643‑M1/1‑55 (MQ=255) gTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt > 2:384349‑M1/1‑55 (MQ=255) tCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTACTATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca < 1:17082‑M1/149‑97 (MQ=255) aGCTGCCCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTTTATGAACAAAATTCAAAGGTTTATg < 1:166412/149‑1 (MQ=255) gctgctCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga < 2:434748‑M1/143‑95 (MQ=255) gctCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt < 1:58363‑M1/149‑104 (MQ=255) gctCCTCCAGCCGTGTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt < 1:418771‑M1/149‑104 (MQ=255) ctcctcCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc > 1:293417‑M1/1‑45 (MQ=255) cctccAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag > 1:78996‑M1/1‑43 (MQ=255) ctccAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc > 1:271398‑M1/1‑42 (MQ=255) ctccAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa < 2:445928‑M1/143‑102 (MQ=255) ctccAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa < 2:350950‑M1/143‑102 (MQ=255) tccAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagcgaattcagca > 1:177598‑M1/1‑41 (MQ=255) cAGCCGTTTTTGCTCAGTAATATCATGCACAAGACATAAggaaggtgcgaacaagtccctgatatggaatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttccccaacagtgaaatc > 2:358186‑M1/1‑39 (MQ=255) aGCCGTTTTTGATCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattca < 2:127457‑M1/143‑106 (MQ=255) ccGTTTTTGCTCAGAAATATCATGCACAATCCAGAAggaaggtgcgaacaagtccctgagatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc < 2:375320‑M1/143‑108 (MQ=255) ttttGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc > 1:404221‑M1/1‑32 (MQ=255) ttGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTTTATGAACAAAATTCAAAGGTTTATGACCACCGGGTAAATGCgaga > 1:54443/1‑149 (MQ=255) taactcatgcatatcatgcacaatCCATAAggaaggtgcgaacaagtccctgatattagatcatgtttgtcagctggagccataaaacaggtttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt < 1:101780‑M1/139‑120 (MQ=255) tggtcagTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc < 2:386717‑M1/140‑115 (MQ=255) tGCTCAGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgataggagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagttgatgcagcagtaagc < 2:288220‑M1/143‑115 (MQ=255) gCTCAGTAAGATCATGCACGATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttggcatctggagccatagaacggggttcgtcatgagtcgtcaactgagcttcgccgacagtgaattcagcagtaagcg > 2:456697‑M1/1‑28 (MQ=255) ccactcatatCATGCTCAATACATAACATGAGCTTCGCCCTATAATTTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTGTATCCTCAGAATTCCAAGGTTTATGACCACCGGGTAAATGCga < 2:102200/137‑1 (MQ=255) aGTAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt > 2:6088‑M1/1‑24 (MQ=255) tAATATCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccag > 1:335250‑M1/1‑22 (MQ=255) tatCGTGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacgtaccttcgccgacagtgaattcagcagtaagcgccgtcagac < 2:109527‑M1/143‑125 (MQ=255) taccatcCACAATACATAAggaaggggcgaacaagtccctgatatgacatcatgattcccaactggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac < 2:168048‑M1/140‑125 (MQ=255) atCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa < 1:204171‑M1/149‑132 (MQ=255) atCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcagcaacttaccttcgccgccagtgaattcagcagtacgcgccgtcagaccagaaaa > 1:444546‑M1/1‑18 (MQ=255) tCATGCACAATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaag < 1:144930‑M1/149‑133 (MQ=255) cATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTTTATGAACAAAATTCAAAGGTTTATGACCACCGGGTAAATGCGAGATTTCATGCATGATa < 1:313157/149‑1 (MQ=255) cacaATACATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa < 2:238845‑M1/143‑132 (MQ=255) aaTACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTTTATGAACAAAATTCAAAGGTTTATGACCACCGGGTAAATGCGAGATTTCATGCATGATAg > 2:145603/1‑143 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagatattttc < 2:172981‑M1/143‑141 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc < 2:61463‑M1/143‑141 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaaagggttcatcctgagtcatcaacttaccttcgccgacagtgaattcagcagtaggcgccgtcagaccacgcgagagattttgttgtcc > 1:439761‑M1/1‑3 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatttttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt > 2:260581‑M1/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg < 1:427983‑M1/149‑149 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg > 1:498886‑M1/1‑1 (MQ=255) aggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt < 2:121538‑M1/143‑143 (MQ=255) | CGATGGCGAGATGCTGCATTTGGCCTGGTTCCGTAATGTGATAAAACTGTCGCCGATTCAGTAATCCGGTCATCGCGTCATGGTGAGCAGCATGTTCCAGCTGCTCCTCCAGCCGTTTTTGCTCAGTAATATCATGCACAATACATAACATGAGCTTGTCGCCATAAATTTCAATCGGTCCGGCATAGGTCTGCACATGACGAGTCGAACCATCCGCCAGTTTATGAACAAAATTCAAAGGTTTATGACCACCGGGTAAATGCGAGATTTCATGCATGATAGGCATGACGCGACGC > CP009273/1401209‑1401504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |