| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4117974 | NA (NA) | 9 (0.330) | 9/256 | NT | 32.1% | noncoding (95/97 nt) | RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP305 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4121055 = | 19 (0.700) | coding (1293/2433 nt) | metL | Bifunctional aspartokinase/homoserine dehydrogenase 2 | |||||
TCCATGTATAAAAAGCGGTGGGTCGCAGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAG > CP009273/4117832‑4118115 | tCCATGTATAAAAAGCGGTGGGTCGCAGGCGGCGTGCGCGGTGTTTATGCCGAATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGAtt < 1:464652/149‑1 (MQ=25)tCCATGTATAAAAAGCGGTGGGTCGCAGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTCGGCCTGACAAGCCGAGCGCATCAGGCGAtt > 1:79525/1‑149 (MQ=255) cATGTATAAAAAGCGGTGGGTCGCAGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGTCTGATAAGCGTAGCGGATCAGGc < 2:321131/143‑1 (MQ=255) gTATAAAAAGCGGTGGGTCGCAGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCGATAGGACGTAGGACTGATAATCGTAGCGCATCAGGCGAt < 2:358921/143‑1 (MQ=255) gTATAAAAAGCGGTGGGACGCAGACAACGTGCTCGGTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGACTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGaa > 2:398935/1‑142 (MQ=255) aaaGCGGTGGGTCGCAGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCgcgc > 1:3256/1‑149 (MQ=255) tCGCAGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTTCCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTGGCGCATCAGGCGATTCCACTCCGCGCCGCTCtttttt > 1:104296/1‑149 (MQ=255) cataaaCAACGAGCACGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCCctct > 2:125308/6‑143 (MQ=255) aGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCtt > 1:407424/1‑149 (MQ=255) cTCGTTGTTTATGCCGGATGCGGCGTGCACGCCTTATCCGGCCTACAAGTTCGTCCAAATTCACTAAATTCCAATGTGACGTAGGCCTGATAAGCGTAGCGCATCAGcctggtggcagtactgcgcaccggcccgaccgaaag < 2:119636‑M1/143‑37 (MQ=255) gcGTTGTTTATGCCGCATTCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTCTTGCTTTAGTa < 2:275406/142‑1 (MQ=255) cGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTAt > 2:106682/1‑143 (MQ=255) cGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTAt > 2:138497/1‑143 (MQ=255) tttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTTGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTtccc > 2:180722/1‑142 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGcctggtggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgt < 1:444867‑M1/149‑64 (MQ=255) tGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGGATTCCCACGTCTCCGGGTGAATCCCCAtctc > 1:432919/1‑149 (MQ=255) aaacctcTTGTCCGGCCTACAAGTTCGTTCAAATTCAATAAAAAGCAATATGACGCAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCTCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATcccc < 2:285603/137‑1 (MQ=38) aaCGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCCCCGGGTTAATCCCCa > 2:127993/1‑143 (MQ=255) aCGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAACTTGAAACATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTATAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACg < 1:303051/149‑1 (MQ=255) aCGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGcctggtggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttccgc < 1:499612‑M1/149‑71 (MQ=255) gCCTTATCCGGCCTCCAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCa < 1:443792/149‑1 (MQ=255) aTCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCAGCAGcctggtggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttccgcg < 2:308179‑M1/143‑72 (MQ=255) aGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGcctggtggcagtactgcacaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttccgcgcagaaaaacgca > 2:358883‑M1/1‑60 (MQ=255) gTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCACCTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCCCGTCTCCGGGTTACTCCCCATCTCCCGCCTGATTCCTTTGGGCGCTTCCgg > 1:52304/1‑149 (MQ=37) tGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGcctggtggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttccgcgcagaaaaacgcatcggcctgggat > 1:38965‑M1/1‑54 (MQ=255) tGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCggg < 1:140319/149‑1 (MQ=255) aaTTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCGGCTTCCGGGAttt > 1:314712/1‑149 (MQ=255) aTAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGc > 1:403905/1‑149 (MQ=255) aaaTTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGcctgatggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttccgcgcagaaaaacgcatcggcctggtattgttcggtaagg < 1:292030‑M1/149‑108 (MQ=255) cAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTCTTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTg < 2:268125/143‑1 (MQ=255) atatGACGTAGGCCTGATAAGCGTAGCGCATCAGcctggtggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttccgcgcagaaaaacgcatcggcctgggattgttcggtaagggcaatatc > 1:5704‑M1/1‑34 (MQ=255) cGTAGGCCTGATAAGCGTCGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCAGGATTTCGTCGCTGCGCTCttt < 2:284467/143‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGcctggtggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttccgcgcagaaaaacgcatcggcctggtattgttcggtaagggcaatatcggttccc < 1:331222‑M1/149‑123 (MQ=255) aGGCCTGATAAGCGTAGCGCGTCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATc > 1:37536/1‑149 (MQ=255) tgCCTCATAAGCGTAGCGCATCAGGCGATTCCACTCCGCCCCTCTCTTGTTTGCTTTATTATTCCCACTTCTCCGTGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTTCGCTCTTTACGCAGATCg < 1:370053/148‑1 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGCTTTCGTCGCTGCGCTCTTTACGCa > 2:327074/1‑143 (MQ=255) gCGTAGCGCCACAGGAGATTCCACACCGCGCCACTCTTTGTTGCTTTAGGACGCCCACGTCCCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCg < 1:2170/149‑1 (MQ=255) aggggatgagcctggtgggggggcggggcaccggcccggccggaagcctgattcaggggcggcatcagtccgtcttccgcgcagaaaaacgcatcggcctggtattgttcggtaagggcaatatcggttcccgttggctggaa < 2:104007‑M1/135‑134 (MQ=255) cATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGc < 2:419778/143‑1 (MQ=255) tCAGcctggtggcagtactgcgcaccggcccgaccgaaagcctgattcaggggctgcatcagtccgtcttacgcgcagaaaaacgcatcggccgggtattgttcggtaagggcaatatcggttcccgttggctggacttgttc > 2:111745‑M1/1‑4 (MQ=255) aGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAg < 2:39102/143‑1 (MQ=255) | TCCATGTATAAAAAGCGGTGGGTCGCAGACAACGTGCTCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCAATATGACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTCCACTCCGCGCCGCTCTTTTTTGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAG > CP009273/4117832‑4118115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |