New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	49 (1.710)	40/270	NT	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTG  >  CP009273/360138‑360426                                                                                                                                                     |                                                                                                                                             ccACCCTCCGGGCCGTTGCTTCGCGACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGGGTTCACCGACAAACAACAGATAAAGCGGAAGGGCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaatt                                                                                                                                              >  1:391465/1‑149 (MQ=11) ccACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTACTACGCAGGAGAGCGCTCACCGACAGACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGGGCCTTTCGGTTTATTTGATGCCTGggggatt                                                                                                                                              >  1:57408/1‑149 (MQ=11)            gCCCTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGCCCTACTCAGGAGCGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTGCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaattgggaa                                                                                                                                         <  2:74267/143‑1 (MQ=255)                 tGCTTCGCAACGGTCACATCCGCCCCCGGCGGATTTGGCCTGCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGGCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGa                                                                                                                              <  1:296463/149‑1 (MQ=14)                    ttCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAAGTGGGAATTAATCCt                                                                                                                                 >  2:346231/1‑143 (MQ=255)                          tcGTTCATATCCGCACCCGGCGGATTGGTCTCACGCAGGACAGCGTTCACCGACACACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGa                                                                                                                           <  2:11168/142‑1 (MQ=17)                             gtCAAATCCGCGCGCGGCGGATTGGTCCGGCGCAGGAGAGCGTTCGCCGACAAGCAACAGATAAAGCGAAAGGCCCAGGCTTTCGACTGGGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGc                                                                                                                  <  1:476069/148‑1 (MQ=17)                               cAAATCCCCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGaaa                                                                                                                      <  2:343594/143‑1 (MQ=255)                                          ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGcc                                                                                                     >  1:301910/1‑149 (MQ=255)                                                          aCTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTaaa                                                                                     >  1:203261/1‑149 (MQ=255)                                                            tCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAgg                                                                                         >  2:146751/1‑143 (MQ=255)                                                                    gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGa                                                                           >  1:458639/1‑149 (MQ=255)                                                                      gTTCACCGACAAACAACAGATAAAATGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAg                                                                         >  1:265525/1‑149 (MQ=255)                                                                      gTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAg                                                                         <  1:229062/149‑1 (MQ=255)                                                                       ttCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGGTACTGTCCTg                                                                              >  2:269574/1‑143 (MQ=255)                                                                         cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATc                                                                      <  1:467089/149‑1 (MQ=255)                                                                              acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGAAGAAAGAGCCTCGTGATACGCCTATTTCCATTGTCTAATGTCAGGGGAAGAt                                                                       >  2:432110/1‑143 (MQ=21)                                                                                       aGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGAc                                                              <  2:273357/143‑1 (MQ=255)                                                                                         aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGACGATCCAGCCGACCAGGCttt                                                      >  1:461949/1‑149 (MQ=255)                                                                                         aTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCttt                                                      <  1:484726/149‑1 (MQ=255)                                                                                                                      aGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGGTCCAGCCGACCAGGCTTTCCACGCGGGCGTGCCGCTCCATg                               >  2:37603/1‑143 (MQ=255)                                                                                                                          tttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCCCTCCATCTCGTTcccgc                     >  1:114961/1‑149 (MQ=255)                                                                                                                           ttCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTcgcgcg                    >  1:463387/1‑149 (MQ=255)                                                                                                                                 ttATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCAGCTCCATGTCGTTCGCGCGGTtctc              <  1:264405/149‑1 (MQ=255)                                                                                                                                             tGGGGAATTGGGAATTAATTCTTGAAGAAGGAATTGCGTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTg  >  1:128188/1‑149 (MQ=255)                                                                                                                                              ggggAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGGTCGCGCGGTGCCCGGAAAcg       >  2:315271/1‑143 (MQ=255)                                                                                                                                                     |                                                                                                                                             CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGGGAAGATCCAGCCGACCAGGCTTTCCACGCCCGCGTGCCGCTCCATGTCGTTCGCGCGGTTCTCGGAAACGCGCTG  >  CP009273/360138‑360426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.