| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3180785 | NA (NA) | 8 (0.280) | 6/270 | NT | 36.4% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | 3710988 = | 14 (0.490) | coding (319/975 nt) | ghrB | glyoxylate/hydroxypyruvate reductase B | |||||
ATTGCTGGAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATGGGAC > CP009273/3710846‑3711132 | accttacagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccac < 2:419730‑M2/1‑1 (MQ=255) ggAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGCAAAATTCTGCTGATGCACACGCGAACCGTATTAACAGAAACCGTCGCCGATGCGCTGATgg > 2:367181/1‑143 (MQ=255) gAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGgt < 1:150962/149‑1 (MQ=255) cGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagaca > 1:514088‑M1/1‑122 (MQ=255) tGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGCCGATGCGCTTACCGCCCGAAAAAGTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCtc < 2:77949/143‑1 (MQ=255) atggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaagtccaCTGATGGCGCTGGTGTTGTCTACCGCtcgtcg > 2:75735‑M2/112‑143 (MQ=255) caTCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagacaa > 2:465123‑M1/1‑115 (MQ=255) aTCAACGATATTCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtaaactggccccctgaatctccagacaaa > 2:288762‑M1/1‑114 (MQ=255) aCGATCTCCGTCGGCTATGACAATTTTGATGTCGAAGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCCACCGTATTCACAGAAACCGTCGCCGACACGCTGATtaaacaggccccctaaatctccagacaaccaat > 2:440222‑M1/1‑110 (MQ=255) cGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCCGATGGCGCGAGTGTTGTCTACCGCCCGGCGGGtggcg > 2:307893/1‑139 (MQ=255) gcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGa > 2:409651‑M2/103‑143 (MQ=255) gcatagggcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTgtctaccgctcgtcgcagttttta < 2:195931‑M2/41‑10 (MQ=255) ctcCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAgg < 2:228673/143‑1 (MQ=255) atagtgcgctgggttatcgctcgccacggtaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGACGCTGATGTTGTCTACCGCTCGTCGGGCTGTGGAGGTAGCAg > 1:372865‑M2/101‑149 (MQ=255) cGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGGTCTGGCGGTAg > 2:391700/1‑143 (MQ=255) cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACggg > 1:291871‑M2/95‑149 (MQ=255) cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagaggtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACggg > 1:511152‑M2/95‑149 (MQ=255) ggCTATGACAATTTTGAGGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTAATGGCGCTGGTGTTGCCTACCGCTCGTCGCGGTCTGGAGGTGACAGa > 2:349465/1‑143 (MQ=255) tGACAATTTTGATGTCGATGCGCTGACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACggg < 2:72059/143‑1 (MQ=255) aTTTTGATGTCGATGCGCTTACCACCCGAAAAATTCTGCTGATGCACACGGCAGCCGTAGTAAGAGAAACCGCCGCTGATACGCGGAGGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTaaaa < 2:158413/143‑1 (MQ=255) ttttGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatac < 1:522378‑M1/149‑63 (MQ=255) gATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGCAGCAGAACGGGTAAAAGCAGGCGAATGGACcgc < 1:340090/149‑1 (MQ=255) acgctTACCGCCCGAAAAATTCTGCTGACGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaagctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt < 2:186702‑M1/142‑70 (MQ=255) cctgAAAAATTCTGGTGGTGCACAGGCCATCCGTATTAACAGAAACCGTCGCCGATACGGTGGTGGCGCTGGTGTTGTCTACCGCTCGGCGGGGTGTGGAGGTAGCAGAAAGGGGAAGGGCAGGCGAATGGACCGCGAGCATa < 2:103517/140‑1 (MQ=255) gAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcatt < 2:464836‑M1/143‑83 (MQ=255) gcttgtaaagagataagagataacagatggctggaaagataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCCGGCGAATGGACCGCGAGCATAGGCCCg > 2:42848‑M2/54‑143 (MQ=255) gtgagaacagatgtctggaaatataggggcaaatccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTc < 1:53807‑M2/112‑1 (MQ=255) ccGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGGCTGGTACGGCACTGACGTTCACCATaaa > 1:178976/1‑149 (MQ=255) cAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGATTGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAAAAATGGGc > 1:405490/1‑149 (MQ=255) cAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGc > 1:215763/1‑149 (MQ=255) gTCGCCGATACGCTGATtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtac < 1:487825‑M1/149‑133 (MQ=255) tccaCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATGGGAc < 1:84591‑M2/145‑1 (MQ=255) gCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATgg < 2:389902/143‑1 (MQ=255) | ATTGCTGGAAAAAATGCCGAAACTGCGTGCCACATCAACGATCTCCGTCGGCTATGACAATTTTGATGTCGATGCGCTTACCGCCCGAAAAATTCTGCTGATGCACACGCCAACCGTATTAACAGAAACCGTCGCCGATACGCTGATGGCGCTGGTGTTGTCTACCGCTCGTCGGGTTGTGGAGGTAGCAGAACGGGTAAAAGCAGGCGAATGGACCGCGAGCATAGGCCCGGACTGGTACGGCACTGACGTTCACCATAAAACACTGGGCATTGTCGGGATGGGAC > CP009273/3710846‑3711132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |