Predicted mutation
evidence seq id position mutation annotation gene description
JC JC CP009273 3,178,254 IS5 (+) +4 bp coding (56‑59/291 nt) yqiC → BMFP family putative fusogenic protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2282398 =NA (NA)39 (0.660) 31/290 1.3 100% noncoding (1195/1195 nt) IS5 repeat region
?CP009273 3178254 = 0 (0.000)coding (56/291 nt) yqiC BMFP family putative fusogenic protein
* ? CP009273 = 2283592NA (NA)52 (0.870) 43/292 0.4 100% noncoding (1/1195 nt) IS5 repeat region
?CP009273 = 3178257 0 (0.000)coding (59/291 nt) yqiC BMFP family putative fusogenic protein

CGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAG  >  CP009273/2283445‑2283735
                                                                                                                                                   |                                                                                                                                               
cGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCa                                                                                                                                                <  2:775594/149‑1 (MQ=11)
        gtaaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATaa                                                                                                                                             <  1:755831/142‑1 (MQ=17)
               tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                                      <  1:354463/144‑1 (MQ=38)
               tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGccac                                                                                                                                 <  2:123026/149‑1 (MQ=255)
                       ggTCCGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGTCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACTCTTTAGCCACCAg                                                                                                                              <  1:343488/144‑1 (MQ=255)
                            gACGGCGCTTACTGCTGCATTCACTGCCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAg                                                                                                                         <  1:423662/144‑1 (MQ=255)
                              cGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTACGGACTTACTTTAACGCTGTAGCCACCAGAACAGATATTGc                                                                                                                  <  2:761177/149‑1 (MQ=17)
                               ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg                                                                                                                 >  2:409325/1‑149 (MQ=255)
                                       ctggtgAAGTCACTGTCGGCGTAGGTAAGTTGATGACTCATGATGAACCCTGTACTAAGCCCTCAGGTGACACACATGTTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGaa                                                                                                              <  1:808130/144‑1 (MQ=18)
                                              aTTCCCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGaacaa                                                                                                       <  1:12591/144‑5 (MQ=255)
                                               ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                 <  2:113358/149‑1 (MQ=255)
                                                  aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAgaga                                                                                                   >  1:520026/1‑144 (MQ=255)
                                                    tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGCTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCCGAACGACAAAGAGaaa                                                                                                 >  1:346031/1‑144 (MQ=255)
                                                         gCGAAGGTAAGTTGATGACTCATGATGAACCGTGTACTATGGCTCCAGATGACAAACATGATCTCATATCAGGTACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAAGCAAACAGaa                                                                                            >  1:627632/1‑144 (MQ=18)
                                                           gAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGACACAGAACCAGAtt                                                                                     >  2:5584/1‑149 (MQ=255)
                                                              ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGa                                                                                       <  1:816266/144‑1 (MQ=255)
                                                               gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCGCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAATGACAAAGAGAAACAGAACCAGATTGATg                                                                                 <  2:674926/149‑1 (MQ=255)
                                                                        tgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAtt                                                                             <  1:358413/144‑1 (MQ=255)
                                                                              atgatgAACCCTGTTCTAAGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc                                                                  >  2:759989/1‑149 (MQ=255)
                                                                                   gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc                                                                  >  1:181156/1‑144 (MQ=255)
                                                                                       ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaat                                                         >  2:802801/1‑149 (MQ=255)
                                                                                        cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCCGATTGATGCATTGAGCTTTCATCCtcag                                                             >  1:504017/1‑141 (MQ=255)
                                                                                            tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTTAGCTTTCATCCTATGAaattaatt                                                    <  2:770294/149‑1 (MQ=255)
                                                                                               aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt                                                 <  2:313475/149‑1 (MQ=255)
                                                                                               aTGGCTCCAGAGCACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCACACCACTCCATTGAGCTTTCATCCTATGAAATTAATTGCt                                                 <  2:1020698/149‑1 (MQ=37)
                                                                                                tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAATCAGATTGATGCATTGAGCTTTCATCCTATGAaattaat                                                     <  1:518525/144‑1 (MQ=255)
                                                                                                 ggCTCCAGATGACAAACATGATCTCATATCAGGGACTAGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCGTTCATCCTCTGAAATTAATTGCTGt                                               >  2:658369/1‑149 (MQ=255)
                                                                                                  gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGAACCTTCCATCACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTCATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                   <  1:245182/144‑1 (MQ=255)
                                                                                                    tctagttggcAAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt                                                 <  1:897936/135‑1 (MQ=255)
                                                                                                    tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGGATTGAGCTTTTATCCTGTGACACTAATTTCTGTTaa                                            >  2:799210/1‑149 (MQ=38)
                                                                                                      cAGATGACAAACAGGATCACATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                          <  2:78961/149‑1 (MQ=255)
                                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCCGTTaa                                            >  1:371044/1‑144 (MQ=255)
                                                                                                           gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                          <  1:821149/144‑1 (MQ=255)
                                                                                                           gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt                                     >  2:7107/1‑149 (MQ=255)
                                                                                                              aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa                                       >  1:111825/1‑144 (MQ=255)
                                                                                                              aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCGGTAGCCTCCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATTCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa                                       <  1:621476/144‑1 (MQ=255)
                                                                                                              aaaCATGATCTCATATCAGGGACTTGTTCGCACATTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATACATGGAGCTTTCATCCTAGAAAATAAATTGCTGTTAAAAGCa                                       >  1:362872/1‑144 (MQ=39)
                                                                                                               aaCATGATCTCATATCAGGGACTTGTTCGCACTTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt                                 <  2:703396/149‑1 (MQ=255)
                                                                                                                  aTGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg                                   <  1:941221/144‑1 (MQ=255)
                                                                                                                   tGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg                                  <  1:666324/144‑1 (MQ=255)
                                                                                                                    gATCTCATATCAAGGACTTGTTCGAACCCTCCATAACGCTGAAGCCACCAGCACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAACTGCTGTTAAAAGCATTGGGt                                 <  1:54789/144‑1 (MQ=255)
                                                                                                                        tcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAAt                        >  2:947755/1‑149 (MQ=255)
                                                                                                                         cATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGa                            >  1:883292/1‑144 (MQ=255)
                                                                                                                         cATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGa                            <  1:555808/144‑1 (MQ=255)
                                                                                                                         cATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGa                            <  1:555688/144‑1 (MQ=255)
                                                                                                                           tatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaaa                          >  1:180174/1‑144 (MQ=255)
                                                                                                                                gggACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAGTTGCTGTTAAAAGCCTTGGGTACAGAAAATACCCATAg                <  2:556267/149‑1 (MQ=255)
                                                                                                                                   aCTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCAt                  <  1:781767/144‑1 (MQ=255)
                                                                                                                                     ttGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATAGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGCGCTTTCACCCAAAGAAATTAATTGCTGTTAAAAGAATTGGGTACAGAAAATACCCaacg                >  1:25945/1‑141 (MQ=255)
                                                                                                                                         tCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATAcc       >  2:451853/1‑149 (MQ=255)
                                                                                                                                           gCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCg     <  2:566277/149‑1 (MQ=255)
                                                                                                                                                   cATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGAGTACAGAAAATACCCCTAGCTCAATACCCGGAg  >  1:944937/1‑144 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
CGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAG  >  CP009273/2283445‑2283735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.